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Shell Programming and Scripting
extracting number of rows
Post 302721333 by johnkim0806 on Thursday 25th of October 2012 10:11:55 AM
10-25-2012
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1. Shell Programming and Scripting
Hi experts a have a very large file and I need to add two columns: the first one numbering the incidence of records and the another with the total count
The input file:
21 2341 A
21 2341 A
21 2341 A
21 2341 C
21 2341 C
21 2341 C
21 2341 C
21 4567 A
21 4567 A
21 4567 C
... (6 Replies)
Discussion started by: juelillo
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2. UNIX for Dummies Questions & Answers
I have a tab delimited text file where the first column can take on three different values : 100, 150, 250. I want to extract all the rows where the first column is 100 and put them into a separate text file and so on. This is what my text file looks like now:
100 rs3794811 0.01 0.3434... (1 Reply)
Discussion started by: evelibertine
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3. Shell Programming and Scripting
Hi all.....
I have a file which contains large data...like
I want to print the rows starting from "pixel" till the file read the letter "TER" into a new output file....
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4. UNIX for Dummies Questions & Answers
I have a tab delimited text file where the first column can take on three different values : 100, 150, 250. I want to extract all the rows where the first column is 100 and put them into a separate text file and so on. This is what my text file looks like now:
100 rs3794811 0.01 0.3434
100... (1 Reply)
Discussion started by: evelibertine
1 Replies
5. UNIX for Dummies Questions & Answers
I have a text file where the second column is a list of numbers going from small to large. I want to extract the rows where the second column is smaller than or equal to 0.0001.
My input:
rs10082730 9e-08 12 46002702
rs2544081 1e-07 12 46015487
rs1425136 1e-06 7 35396742
rs2712590... (1 Reply)
Discussion started by: evelibertine
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6. Shell Programming and Scripting
Hi, I want to extract rows that have specific characters at a certain column. It might be best to show you my problem.
So my tab delimited file looks like this:
YPR161C 10 16 864445 866418 - Verified 3.558
YOL138C 6 15 61325 65350 - Verified 0.6... (1 Reply)
Discussion started by: phil_heath
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7. UNIX for Dummies Questions & Answers
Hi,
I have a tab delimited text file with multiple columns. The second and third columns include numbers that have not been sorted. I want to extract rows where the second column includes a value between -0.01 and 0.01 (including both numbers) and the first third column includes a value between... (1 Reply)
Discussion started by: evelibertine
1 Replies
8. UNIX for Dummies Questions & Answers
Hi,
I have a file that looks like the following:
10 100080417 rs7915867 ILMN_1343295 12 6243093 7747537
10 100190264 rs2296431 ILMN_1343295 12 6643093 6647537
10 100719451 SNP94374 ILMN_1343295 12 6688093 7599537 ... (1 Reply)
Discussion started by: evelibertine
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9. Shell Programming and Scripting
Hi I have a matrix with n rows and m columns like below example. i want to extract all the pairs with values <200.
Input
A B C D
A 100 206 51 300
B 206 100 72 48
C 351 22 100 198
D 13 989 150 100
Output format
A,A:200
A,C:51
B,B:100... (2 Replies)
Discussion started by: anurupa777
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10. Shell Programming and Scripting
I have a series of csv files in the following format
eg file1
Experiment Name,XYZ_07/28/15,
Specimen Name,Specimen_001,
Tube Name, Control,
Record Date,7/28/2015 14:50,
$OP,XYZYZ,
GUID,abc,
Population,#Events,%Parent
All Events,10500,
P1,10071,95.9
Early Apoptosis,1113,11.1
Late... (6 Replies)
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tm::coverage
TM::Coverage(3pm) User Contributed Perl Documentation TM::Coverage(3pm) NAME
TM::Coverage - Topic Maps, Code Coverage DESCRIPTION
This auxiliary package keeps track of the code coverage. Probably quite irrelevant for a user. Automatically generated for TM (1.44). ---------------------------- ------ ------ ------ ------ ------ ------ ------ File stmt bran cond sub pod time total ---------------------------- ------ ------ ------ ------ ------ ------ ------ blib/lib/TM.pm 96.4 84.5 58.0 93.7 90.6 27.5 89.6 blib/lib/TM/Analysis.pm 100.0 90.9 n/a 100.0 100.0 0.0 97.5 blib/lib/TM/AsTMa/Fact.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0 blib/lib/TM/AsTMa/Fact2.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0 blib/lib/TM/Bulk.pm 76.8 71.4 62.5 85.7 100.0 0.0 75.3 blib/lib/TM/CTM/CParser.pm 65.6 34.3 31.0 84.6 0.0 1.6 52.5 blib/lib/TM/CTM/Parser.pm 90.9 50.0 n/a 100.0 0.0 0.0 79.4 blib/lib/TM/DM.pm 100.0 65.0 66.7 100.0 n/a 0.0 96.5 blib/lib/TM/Graph.pm 99.1 88.5 n/a 100.0 100.0 0.0 97.4 blib/lib/TM/Index.pm 100.0 80.0 60.0 100.0 83.3 0.3 87.8 .../Index/Characteristics.pm 100.0 100.0 n/a 100.0 0.0 0.0 97.0 blib/lib/TM/Index/Match.pm 98.5 87.5 n/a 100.0 100.0 0.5 97.6 blib/lib/TM/LTM/CParser.pm 84.9 45.3 42.7 98.2 0.0 0.2 67.8 blib/lib/TM/LTM/Parser.pm 95.7 62.5 50.0 100.0 0.0 0.0 87.1 blib/lib/TM/Literal.pm 45.8 0.0 11.8 30.0 0.0 0.4 24.2 blib/lib/TM/MapSphere.pm 96.5 84.6 68.8 100.0 100.0 0.0 91.7 .../TM/Materialized/AsTMa.pm 100.0 n/a n/a 100.0 0.0 0.0 95.5 ...ib/TM/Materialized/LTM.pm 100.0 n/a n/a 100.0 0.0 0.0 95.5 .../TM/Materialized/MLDBM.pm 100.0 83.3 n/a 100.0 0.0 0.0 92.6 ...b/TM/Materialized/Null.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0 ...TM/Materialized/Stream.pm 100.0 100.0 100.0 100.0 0.0 0.0 96.0 ...ib/TM/Materialized/XTM.pm 100.0 n/a n/a 100.0 0.0 0.0 96.7 blib/lib/TM/PSI.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0 blib/lib/TM/QL.pm 91.4 61.5 66.7 100.0 50.0 0.1 83.9 blib/lib/TM/QL/CParser.pm 76.2 42.4 41.9 90.3 0.0 9.1 62.0 blib/lib/TM/QL/PE.pm 83.8 77.3 80.0 91.7 0.0 52.5 80.5 blib/lib/TM/QL/TS.pm 65.2 35.4 27.8 70.8 53.3 2.4 56.9 blib/lib/TM/ResourceAble.pm 88.1 87.5 n/a 100.0 100.0 0.0 90.0 .../TM/ResourceAble/MLDBM.pm 100.0 75.0 n/a 100.0 0.0 0.0 94.2 blib/lib/TM/Serializable.pm 94.9 65.6 100.0 100.0 100.0 0.0 84.1 .../TM/Serializable/AsTMa.pm 99.1 87.9 66.7 100.0 100.0 0.0 94.2 ...TM/Serializable/Dumper.pm 100.0 n/a n/a 100.0 0.0 0.0 93.5 ...ib/TM/Serializable/LTM.pm 94.1 n/a n/a 83.3 100.0 0.0 92.0 ...ib/TM/Serializable/XTM.pm 96.3 85.2 72.9 100.0 100.0 0.2 91.5 .../lib/TM/Synchronizable.pm 100.0 75.0 100.0 100.0 100.0 0.0 97.2 ...M/Synchronizable/MLDBM.pm 100.0 50.0 n/a 100.0 0.0 0.0 89.3 ...nchronizable/MapSphere.pm 100.0 63.6 64.3 100.0 100.0 0.0 88.6 ...TM/Synchronizable/Null.pm 100.0 n/a n/a 100.0 0.0 0.0 87.5 blib/lib/TM/Tau.pm 100.0 91.7 80.0 100.0 0.0 0.0 95.6 blib/lib/TM/Tau/Federate.pm 63.2 39.3 n/a 62.5 27.3 0.0 54.5 blib/lib/TM/Tau/Filter.pm 100.0 91.7 66.7 100.0 50.0 0.0 90.0 .../TM/Tau/Filter/Analyze.pm 100.0 n/a n/a 100.0 100.0 0.0 100.0 blib/lib/TM/Tree.pm 100.0 57.1 44.4 100.0 66.7 0.0 88.0 blib/lib/TM/Utils.pm 100.0 50.0 n/a 100.0 0.0 0.0 89.3 ...ib/TM/Utils/TreeWalker.pm 100.0 100.0 n/a 100.0 0.0 0.0 96.0 ...ib/TM/Workbench/Plugin.pm 100.0 n/a n/a 100.0 0.0 0.0 75.0 ...M/Workbench/Plugin/Tau.pm 87.5 50.0 n/a 80.0 0.0 0.0 73.1 yapp/astma-fact.yp 96.9 91.5 73.3 97.8 0.0 4.8 92.7 yapp/astma2-fact.yp 97.4 91.6 58.3 100.0 0.0 0.2 91.6 Total 76.8 45.2 40.2 91.2 57.0 100.0 63.8 ---------------------------- ------ ------ ------ ------ ------ ------ ------ SEE ALSO
TM COPYRIGHT AND LICENSE
Copyright 200[8] by Robert Barta, <drrho@cpan.org> This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.10.1 2008-10-05 TM::Coverage(3pm)