finding the strings beween 2 characters "/" & "/" in .txt file Post: 302721111

9 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Explain the line "mn_code=`env|grep "..mn"|awk -F"=" '{print $2}'`"

Hi Friends, Can any of you explain me about the below line of code? mn_code=`env|grep "..mn"|awk -F"=" '{print $2}'` Im not able to understand, what exactly it is doing :confused: Any help would be useful for me. Lokesha

2. Shell Programming and Scripting

How to remove "New line characters" and "spaces" at a time

Dear friends, following is the output of a script from which I want to remove spaces and new-line characters. Example:- Line1 abcdefghijklmnopqrstuvwxyz Line2 mnopqrstuvwxyzabcdefghijkl Line3 opqrstuvwxyzabcdefdefg Here in above example, at every starting line there is a �tab� &...

3. Shell Programming and Scripting

"sed" to check file size & echo " " to destination file

Hi, I've modified the syslogd source to include a thread that will keep track of a timer(or a timer thread). My intention is to check the file size of /var/log/messages in every one minute & if the size is more than 128KB, do a echo " " > /var/log/messages, so that the file size will be set...

4. Shell Programming and Scripting

awk command to replace ";" with "|" and ""|" at diferent places in line of file

Hi, I have line in input file as below: 3G_CENTRAL;INDONESIA_(M)_TELKOMSEL;SPECIAL_WORLD_GRP_7_FA_2_TELKOMSEL My expected output for line in the file must be : "1-Radon1-cMOC_deg"|"LDIndex"|"3G_CENTRAL|INDONESIA_(M)_TELKOMSEL"|LAST|"SPECIAL_WORLD_GRP_7_FA_2_TELKOMSEL" Can someone...

5. Red Hat

files having Script which works behind "who" & "w" commands

Dear All, plz print the path of files which have the script of "who" & "w" commands. thnx in advance.

6. Web Development

How would I mod_rewrite "/~a1Pha" and "/=a1Pha" to "/paste/a1Pha.htm"? (internally & externally)

Basically I want to shorten URLs on my html pasting site (pasteht.ml), by using "/~a1Pha" instead of "/paste/a1Pha". The ID is 5 numbers and letters, both cases. For example: /~idnum serves /paste/idnum.htm /=idnum serves /paste/idnum.htm /paste/idnum redirects to /~idnum (to update any old...

7. UNIX for Dummies Questions & Answers

Using "mailx" command to read "to" and "cc" email addreses from input file

How to use "mailx" command to do e-mail reading the input file containing email address, where column 1 has name and column 2 containing �To� e-mail address and column 3 contains �cc� e-mail address to include with same email. Sample input file, email.txt Below is an sample code where...

8. Shell Programming and Scripting

Bash script - Print an ascii file using specific font "Latin Modern Mono 12" "regular" "9"

Hello. System : opensuse leap 42.3 I have a bash script that build a text file. I would like the last command doing : print_cmd -o page-left=43 -o page-right=22 -o page-top=28 -o page-bottom=43 -o font=LatinModernMono12:regular:9 some_file.txt where : print_cmd ::= some printing...

9. AIX

Apache 2.4 directory cannot display "Last modified" "Size" "Description"

Hi 2 all, i have had AIX 7.2 :/# /usr/IBMAHS/bin/apachectl -v Server version: Apache/2.4.12 (Unix) Server built: May 25 2015 04:58:27 :/#:/# /usr/IBMAHS/bin/apachectl -M Loaded Modules: core_module (static) so_module (static) http_module (static) mpm_worker_module (static) ...

LEARN ABOUT DEBIAN

re-pcr

RE-PCR(1)						      General Commands Manual							 RE-PCR(1)

NAME

       re-PCR -- Find sequence tagged sites (STS) in DNA sequences

SYNOPSIS

       re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]

       re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]

       re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]

       re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]

DESCRIPTION

       Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
       forming STS and primer searches.

OPTIONS

       -p=hash-file
		 Perform primer lookup using hash-file

       -P=hash-file
		 Perform primer lookup using hash-file

       -s=hash-file
		 Perform STS lookup using hash-file

       -S=hash-file
		 Perform STS lookup using hash-file

       -n=mism	 Set max allowed mismatches per primer for lookup

       -g=gaps	 Set max allowed indels per primer for lookup

       -m=margin Set variability for STS size for lookup

       -l	 Use presize alignments (only if gaps>0)

       -G	 Print alignments in comments

       -d=min-max
		 Set default STS size

       -r=+|-	 Enable/disable reverse STS lookup

       -O=+|-	 Enable/disable syscall optimisation

       -C=batchcnt
		 Set number of STSes per batch

       -o=outfile
		 Set output file name

       -q	 Quiet (no progress indicator)

EXAMPLE

	famap -tN -b genome.famap org/chr_*.fa

	fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap

	re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200

       See famap(1) and fahash(1)

SEE ALSO

       /usr/share/doc/ncbi-epcr/README.txt

       bioperl(1), e-pcr(1), famap(1) and fahash(1)

AUTHORS

       This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others).  Permission is  granted
       to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
       the Free Software Foundation.

       On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.

								    April 2008								 RE-PCR(1)