What I need is to first find the string between 2nd and 3rd "/" that here means
in line 1:jtagc , 2:io_toplevel 3:external_tdrs and then make another .txt file with that name(the one that is found) and put all the same cases in that file and remove from main list
So at the end create for example 3files :
1-jtagc.txt 2-io_toplevel 3-external_tdrs
(Text file is more than 50K lines, so the code should be capable to search line by line)
Thanks in advance
And sorry for my long question
Last edited by Scrutinizer; 10-25-2012 at 08:27 AM..
Reason: code tags
Hi Friends,
Can any of you explain me about the below line of code?
mn_code=`env|grep "..mn"|awk -F"=" '{print $2}'`
Im not able to understand, what exactly it is doing :confused:
Any help would be useful for me.
Lokesha (4 Replies)
Dear friends, following is the output of a script from which I want to remove spaces and new-line characters.
Example:-
Line1 abcdefghijklmnopqrstuvwxyz
Line2 mnopqrstuvwxyzabcdefghijkl
Line3 opqrstuvwxyzabcdefdefg
Here in above example, at every starting line there is a “tab” &... (4 Replies)
Hi,
I've modified the syslogd source to include a thread that will keep track of a timer(or a timer thread). My intention is to check the file size of /var/log/messages in every one minute & if the size is more than 128KB, do a echo " " > /var/log/messages, so that the file size will be set... (7 Replies)
Hi,
I have line in input file as below:
3G_CENTRAL;INDONESIA_(M)_TELKOMSEL;SPECIAL_WORLD_GRP_7_FA_2_TELKOMSEL
My expected output for line in the file must be :
"1-Radon1-cMOC_deg"|"LDIndex"|"3G_CENTRAL|INDONESIA_(M)_TELKOMSEL"|LAST|"SPECIAL_WORLD_GRP_7_FA_2_TELKOMSEL"
Can someone... (7 Replies)
Basically I want to shorten URLs on my html pasting site (pasteht.ml), by using "/~a1Pha" instead of "/paste/a1Pha". The ID is 5 numbers and letters, both cases.
For example:
/~idnum serves /paste/idnum.htm
/=idnum serves /paste/idnum.htm
/paste/idnum redirects to /~idnum (to update any old... (0 Replies)
How to use "mailx" command to do e-mail reading the input file containing email address, where column 1 has name and column 2 containing “To” e-mail address
and column 3 contains “cc” e-mail address to include with same email.
Sample input file, email.txt
Below is an sample code where... (2 Replies)
Hello.
System : opensuse leap 42.3
I have a bash script that build a text file.
I would like the last command doing :
print_cmd -o page-left=43 -o page-right=22 -o page-top=28 -o page-bottom=43 -o font=LatinModernMono12:regular:9 some_file.txt
where :
print_cmd ::= some printing... (1 Reply)
Hi 2 all,
i have had AIX 7.2
:/# /usr/IBMAHS/bin/apachectl -v
Server version: Apache/2.4.12 (Unix)
Server built: May 25 2015 04:58:27
:/#:/# /usr/IBMAHS/bin/apachectl -M
Loaded Modules:
core_module (static)
so_module (static)
http_module (static)
mpm_worker_module (static)
... (3 Replies)
Discussion started by: penchev
3 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)
10-25-2012
