hi!
i have a file like the attachement.
I'd like to get for each line the min, max and average values. (there is 255 values for each line)
how can i get that ?
i try this, is it right?
BEGIN {FS = ","; OFS = ";";max=0;min=0;moy=0;total=0;freq=890}
$0 !~ /Trace1:/ {
... (1 Reply)
Hello,
I have 800 or so files with 3 columns each and >10000 lines each.
For each file and each line I would like to print the maximum column number for each line. Then I would like to 'paste' each of these files together (column-wise) so that the file with expression in label '_1' is the... (6 Replies)
Hi,
I have a text file containing numbers. There are up to 6 numbers per row and I need to read them, check if they are 0 and if they are not zero check if they are within a given interval (min,max). If they exceed the max or min they should be set to max or min respectively, if they are in the... (4 Replies)
Hello Experts,
I have got a txt files which has multiple columns, I want to get the max, min and diff (max-min) for each column in the same txt file. Example:
cat file.txt
a 1 4
b 2 5
c 3 6
I want ouput like:
cat file.txt
a 1 4
b 2 5
c 3 6
Max 3 6
Min 1 4
Diff 2 2
awk 'min=="" ||... (4 Replies)
Hi guys,
I already search on the forum but i can't solve this on my own.
I have a lot of files like this:
And i need to print the line with the maximum value in last column but if the value is the same (2 in this exemple for the 3 last lines) i need get the line with the minimum value in... (4 Replies)
aaa: 3 ms
aaa: 2 ms
aaa: 5 ms
aaa: 10 ms
..........
to get the 3 2 5 10 ...'s min avg and max
something like
min: 2 ms avg: 5 ms max: 10 ms (2 Replies)
Gents,
I have a big file file like this.
5100010002
5100010004
5100010006
5100010008
5100010010
5100010012
5102010002
5102010004
5102010006
5102010008
5102010010
5102010012
The file is sorted and I would like to find the min and max value, taking in the consideration key1... (3 Replies)
Hi to all,
Please help on the following problem, I'm not where to begin, if awk or shell script.
I have pairs of ranges of numbers and I need to find the root or roots of ranges based on min Range and Max ranges
Example #1:
If min range is 120000 and max ranges 124999, it means that are... (5 Replies)
Hello,
I have this table:
chr1_16857_17742 - chr1 17369 17436 "ENST00000619216.1"; "MIR6859-1"; - 67
chr1_16857_17742 - chr1 14404 29570 "ENST00000488147.1"; "WASH7P"; - 885
chr1_16857_18061 - chr1 ... (5 Replies)
Discussion started by: coppuca
5 Replies
LEARN ABOUT DEBIAN
bio::searchio::gmap_f9
Bio::SearchIO::gmap_f9(3pm) User Contributed Perl Documentation Bio::SearchIO::gmap_f9(3pm)NAME
Bio::SearchIO::gmap_f9 - Event generator for parsing gmap reports (Z format)
SYNOPSIS
# Do not use this object directly - it is used as part of the
# Bio::SearchIO system.
use Bio::SearchIO;
my $searchio = Bio::SearchIO->new(-format => 'gmap',
-file => 't/data/her2.gmapz');
while( my $result = $searchio->next_result ) {
while( my $hit = $result->next_hit ) {
while( my $hsp = $hit->next_hsp ) {
# ...
}
}
}
DESCRIPTION
This object encapsulated the necessary methods for generating events suitable for building Bio::Search objects from a GMAP "compressed"
report (from gmap run with -Z flag) Read the Bio::SearchIO for more information about how to use this.
REVERSE STRAND AND BIOPERL COORDINATES
I believe that I'm doing the correct thing when reporting hits on the negative strand of the genome. In particular, I've compared the
"exons" this code generates with the set returned by ncbi's megablast web service. NCBI's hsp's are ordered differently and have a
different genomic location (off by ~18,000,000 bases, padding?) but the starts, ends, and lengths were similar and my strand handling
matches theirs. E.g.
CDNA GENOME
start end strand start end strand
blast
1913 2989 1 86236731 86237808 -1
1 475 1 86260509 86260983 -1
1510 1727 1 86240259 86240476 -1
841 989 1 86243034 86243182 -1
1381 1514 1 86240630 86240763 -1
989 1122 1 86242457 86242590 -1
599 729 1 86247470 86247600 -1
473 608 1 86259972 86260107 -1
1255 1382 1 86240837 86240964 -1
730 842 1 86244040 86244152 -1
1813 1921 1 86238123 86238231 -1
1725 1814 1 86239747 86239836 -1
1167 1256 1 86241294 86241383 -1
1120 1188 1 86242319 86242387 -1
gmap
1 475 1 104330509 104330983 -1
476 600 1 104329980 104330104 -1
601 729 1 104317470 104317598 -1
730 841 1 104314041 104314152 -1
842 989 1 104313034 104313181 -1
990 1121 1 104312458 104312589 -1
1122 1187 1 104312320 104312385 -1
1188 1256 1 104311294 104311362 -1
1257 1382 1 104310837 104310962 -1
1383 1511 1 104310633 104310761 -1
1512 1726 1 104310260 104310474 -1
1727 1814 1 104309747 104309834 -1
1815 1917 1 104308127 104308229 -1
1918 2989 1 104306731 104307802 -1
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - George Hartzell
Email hartzell@alerce.com
CONTRIBUTORS
Additional contributors names and emails here
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with an underscore (_).
next_result
Title : next_result
Usage : $result = stream->next_result
Function: Reads the next ResultI object from the stream and returns it.
Returns : A Bio::Search::Result::ResultI object
Args : n/a
perl v5.14.2 2012-03-02 Bio::SearchIO::gmap_f9(3pm)