hi!
i have a file like the attachement.
I'd like to get for each line the min, max and average values. (there is 255 values for each line)
how can i get that ?
i try this, is it right?
BEGIN {FS = ","; OFS = ";";max=0;min=0;moy=0;total=0;freq=890}
$0 !~ /Trace1:/ {
... (1 Reply)
Hello,
I have 800 or so files with 3 columns each and >10000 lines each.
For each file and each line I would like to print the maximum column number for each line. Then I would like to 'paste' each of these files together (column-wise) so that the file with expression in label '_1' is the... (6 Replies)
Hi,
I have a text file containing numbers. There are up to 6 numbers per row and I need to read them, check if they are 0 and if they are not zero check if they are within a given interval (min,max). If they exceed the max or min they should be set to max or min respectively, if they are in the... (4 Replies)
Hello Experts,
I have got a txt files which has multiple columns, I want to get the max, min and diff (max-min) for each column in the same txt file. Example:
cat file.txt
a 1 4
b 2 5
c 3 6
I want ouput like:
cat file.txt
a 1 4
b 2 5
c 3 6
Max 3 6
Min 1 4
Diff 2 2
awk 'min=="" ||... (4 Replies)
Hi guys,
I already search on the forum but i can't solve this on my own.
I have a lot of files like this:
And i need to print the line with the maximum value in last column but if the value is the same (2 in this exemple for the 3 last lines) i need get the line with the minimum value in... (4 Replies)
aaa: 3 ms
aaa: 2 ms
aaa: 5 ms
aaa: 10 ms
..........
to get the 3 2 5 10 ...'s min avg and max
something like
min: 2 ms avg: 5 ms max: 10 ms (2 Replies)
Gents,
I have a big file file like this.
5100010002
5100010004
5100010006
5100010008
5100010010
5100010012
5102010002
5102010004
5102010006
5102010008
5102010010
5102010012
The file is sorted and I would like to find the min and max value, taking in the consideration key1... (3 Replies)
Hi to all,
Please help on the following problem, I'm not where to begin, if awk or shell script.
I have pairs of ranges of numbers and I need to find the root or roots of ranges based on min Range and Max ranges
Example #1:
If min range is 120000 and max ranges 124999, it means that are... (5 Replies)
Hello,
I have this table:
chr1_16857_17742 - chr1 17369 17436 "ENST00000619216.1"; "MIR6859-1"; - 67
chr1_16857_17742 - chr1 14404 29570 "ENST00000488147.1"; "WASH7P"; - 885
chr1_16857_18061 - chr1 ... (5 Replies)
Discussion started by: coppuca
5 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)