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Top Forums Shell Programming and Scripting matching the coordintaes between 2 files Post 302711413 by anurupa777 on Saturday 6th of October 2012 06:17:01 AM
Old 10-06-2012
Data matching the coordintaes between 2 files

Hii
i have 2 files my file1 contains range of values in col 2 and col3. The second file contains the associated names with respect to that particular range i want to check whether values in first file fall with in the range of values in 2nd file if yes then i want to get the associated name as shown in example

file1

Code:
chr1 10 20
hu1 5 15
hu1 12 19
hu1 36 40
hu1 78 89
hu1 310 865
hu1 80 85

file2

Code:
chr1 1 30 xyz
hu1 35 45 ytg
hu1 70 90 ttf
hu1 300 920 opp

output
Code:
chr1 10 20 xyz 
hu1 5 15 xyz
hu1 12 19 xyz
hu1 36 40 ytg
hu1 78 89 ttf
hu1 310 865 opp
hu1 80 85 ttf

 

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ZDIFF(1)                                                      General Commands Manual                                                     ZDIFF(1)

NAME
zcmp, zdiff - compare compressed files SYNOPSIS
zcmp [ cmp_options ] file1 [ file2 ] zdiff [ diff_options ] file1 [ file2 ] DESCRIPTION
Zcmp and zdiff are used to invoke the cmp or the diff program on files compressed via gzip. All options specified are passed directly to cmp or diff. If only file1 is specified, it is compared to the uncompressed contents of file1.gz. If two files are specified, their con- tents (uncompressed if necessary) are fed to cmp or diff. The input files are not modified. The exit status from cmp or diff is pre- served. SEE ALSO
cmp(1), diff(1), zmore(1), zgrep(1), znew(1), zforce(1), gzip(1), gzexe(1) BUGS
Messages from the cmp or diff programs may refer to file names such as "-" instead of to the file names specified. ZDIFF(1)
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