Hello All,
I have a string "CP_STATUS OSSRC_R6_0_Shipment_R1H_CU AOM_901046 R1H_LLSV1_2008031", and I just want to extract LLSV1, but I dont get the expected result when using the sed command below.
# echo "CP_STATUS OSSRC_R6_0_Shipment_R1H_CU AOM_901046 R1H_LLSV1_2008031" | awk '{print... (4 Replies)
myfile:
AAAaaa
BBBbbb
CCCccc
AAAeee
DDDddd
how to replace the last AAA as EEEEE using sed?
like this:
AAAaaa
BBBbbb
CCCccc
EEEEEeee
DDDddd (14 Replies)
Hi ,
My file have data like
4:ALMOST NEVER PR 1925836
5:NEVER PR W DDA 5857610
6:NEVER PR WO DDA 26770205
but i want to replace the spaces before last numric digits out put should be like this
4:ALMOST NEVER PR=1925836
5:NEVER PR W DDA=5857610
6:NEVER PR WO... (7 Replies)
here is what i want to achieve... consider a file contains below contents. the file size is large about 60mb
cat dump.sql
INSERT INTO `table1` (`id`, `action`, `date`, `descrip`, `lastModified`) VALUES (1,'Change','2011-05-05 00:00:00','Account Updated','2012-02-10... (10 Replies)
my file has thousands of line but let me show what i want to achieve... here is one line from that file
cat fileName.txt
(2,'','user3002,user3003','USER_DATA_SINGLE',1,0,0,'BACKUP',2,NULL,0,450,NULL,NULL,'','2011-05-10... (13 Replies)
Hi
I know sed and awk has options to give range of line numbers, but
I need to replace pattern in specific lines
Something like
sed -e '1s,14s,26s/pattern/new pattern/' file name
Can somebody help me in this....
I am fine with see/awk/perl
Thank you in advance (9 Replies)
I've got a file like so:
...lots of lines, etc.
push "route 10.8.0.0 255.255.255.0"
push "route 192.168.1.123 255.255.255.0"
...lots of lines, etc.
I want to sed find/replace the IP address in the second line, whatever it is, with a new IP address, but I don't want to touch the first line.... (5 Replies)
I have a file with multiple lines, all in the same format. For each line, I need to replace the sequence of digits after the last : with a new value, but keep the single quote at the end of the line.
Example:
Input: ( two lines of file)
Name: 'text1:200/text2:1.2.3.4'
Name2:... (19 Replies)
Hi,
i want to replace the following lines in such a way that if the word merge exists in first column it must replace the 3rd column as M and if parse exists in first column then the last column must P, if neither it must mark it as X. I have tried the solution using awk, but it is saying... (6 Replies)
Discussion started by: charlie87
6 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)