first line: whatever in front of ID 1 alphanumeric number before Human
next lines :whatever in front of "FT "and "coiled" in digits
next lines :search for number mentioned before word coiled and cut the velow sequence accoridngly that
so 59-140 shoul dbe onse ssequence and 169-272 other sequence
Code:
3BP5L
COILED 59 140
COILED 169 272
MAELRQVPGG RETPQGELRP EVVEDEVPRS PVAEEPGGGG SSSSEAKLSP REEEELDPRI
QEELEHLNQA SEEINQVELQ LDEARTTYRR ILQESARKLN TQGSHLGSCI EKARPYYEAR
RLAKEAQQET QKAALRYERA VSMHNAAREM (should belong to number 59-140 although I just did it myself as an example)
VFVAEQGVMA DKNRLDPTWQ EMLNHATCKV
NEAEEERLRG EREHQRVTRL CQQAEARVQA LQKTLRRAIG KSRPYFELKA QFSQILEEHK
AKVTELEQQV AQAKTRYSVA LRNLEQISEQ IHARRRGGLP PHPLGPRRSS PVGAEAGPED
MEDGDSGIEG AEGAGLEEGS SLGPGPAPDT DTLSLLSLRT VASDLQKCDS VEHLRGLSDH
VSLDGQELGT RSGGRRGSDG GARGGRHQRS VSL(this should belong to number 169-272 although I just did it myself as an example)
in above answers i PUT SEQUENCES JUST AN Example but I want to cut the sequences of these numbers from the whole sequence and write in the output.
Hi there,
I'm wanting to produce a shell script that will check through some file names and identify a skip in sequence (four digit seq num in file name).
I have played on the idea of havng a file that has a sorted list of file names which I can read line at a time and cut out the sequence... (1 Reply)
A developer of mine has this requirement - I couldn't tell her quickly how to do it with UNIX commands or a quick script so she's writing a quick program to do it - but that got my curiousity up and thought I'd ask here for advice.
In a text file, there are some records (about half of them)... (4 Replies)
Hi,
I have a data as follow:
1 400
2 239
3 871
4 219
5 543
6 ...
7 ...
.. ...
.. ...
99 818
100 991
I want to replace the sequence number (column 1) that start from 150. The output should like this:
150 400
151 239 (3 Replies)
Hi,
I have a string like:
DBMS stats (Number Used | Percentage of total): 10 | 1.00%
I have a sed command to extract numbers from this string:
sed "s///g;s/^$/-1/;"
Output: 10100
However what I want the sed command to return is only the first number(regardless of its size) i.e.... (3 Replies)
Dear Perl users,
I need your help to solve my problem below.
I want to print the sequence number without missing number within the range.
E.g. my sequence number :
1 2 3 4 5 6 7 8 11 12 13 14
my desired output:
1 -8 , 11-14
my code below but still problem with the result:
1 - 14
1 -... (2 Replies)
Am using unix aix KSH...
I have the files called
MMRR0106.DAT
MMRR0206.DAT
MMRR0406.DAT
MMRR0506.DAT
MMRR0806.DAT
....
...
MMRR3006.DAT
MMRR0207.DAT
These files are in one dircetory /venky ?
I want the output like this ?
Missing files are :
MMRR0306.DAT
MMRR0606.DAT... (7 Replies)
Hi Forum:
I have struggle with it and decide to use my eye ball to accomplish this.
Basically I am looking for sequence of date inside a file.
If one of the sequence repeat 2-3 time or skip once; it's still consider a match.
input text file:
Sep 6 A
Sep 6 A
Sep 10 A
Sep 7 B
Sep 8... (7 Replies)
Hi,
Need to add sequnce number to one of the csv file and please find below
actual requirement.
Input file
ABC,500
XXQ,700
ADF,400,
ART,200
Out put file should be
1,ABC,500
2,XXQ,700
3,ADF,400,
4,ART,200 (3 Replies)
Hello, here I am posting my query again with modified data input files.
see my query is :
i have two input files file1 and file2.
file1 is smalldata.fasta
>gi|546671471|gb|AWWX01449637.1| Bubalus bubalis breed Mediterranean WGS:AWWX01:contig449636, whole genome shotgun sequence... (20 Replies)
Discussion started by: harpreetmanku04
20 Replies
LEARN ABOUT FREEBSD
rndtest
RNDTEST(4) BSD Kernel Interfaces Manual RNDTEST(4)NAME
rndtest -- FIPS 140-2 random number generator test monitor
SYNOPSIS
device rndtest
DESCRIPTION
The rndtest driver ``hooks up'' to hardware crypto devices to monitor the entropy data passed to the random(4) subsystem. This data is peri-
odically tested for FIPS 140-2 compliance and statistics are collected. If the harvested entropy fails any of the FIPS test suite, then it
is discarded and testing is continuously applied until ``good data'' is received from the device. Failures are optionally reported on the
console.
SEE ALSO crypto(4), hifn(4), random(4), safe(4), ubsec(4), crypto(9)HISTORY
The idea for this and the original code came from Jason L. Wright. The rndtest device driver first appeared in FreeBSD 5.0.
BUGS
Crypto device drivers must be compiled specially to make use of this driver; this should not be necessary. This feature might better be
integrated into the random(4) subsystem where it can be applied to devices that claim to supply ``pure entropy''.
BSD March 11, 2003 BSD