I have searched the internet (including these forums) and perhaps I'm not using the right wording.
What I'm looking for is a function (preferably C) that analyzes the similitude of two numerical or near-numerical values, and returns either a true/false (match/nomatch) or a return code that... (4 Replies)
Hi all
I have two files X.txt and Y.txt. Both file contains same number of sentences. The content of X.txt is
The filter described above may be combined.
and the content of Y.txt is
The filter describ+ed above may be combin+ed.
Some of the words are separated with "+"... (2 Replies)
Hello,
I'm new in Shell scripting but i should write a script, which inserts the license header out of a txt-File into the files in our Projekt. For the Java classes it runs without Problems but for XML files not. At xml-files i have to put the license Header after the xml-Header (?xml... (1 Reply)
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Hi,
I have one file with one column and several hundred entries
File1:
NA1
NA2
NA3And now I need to run a command within a mapping aligner tool to insert these sample names into a sequence alignment file (SAM) such that they look like this
@RG ID:Library1 SM:NA1 PL:Illumina ... (7 Replies)
I hope this makes sense and is possible.
I am trying to match $1 of panel_genes.txt with $3 of RefSeqGene.txt and when a match is found the value in $6 of RefSeqGene.txt
Example: ACTA2 is $1 of panel_genes.txt
ACTA2 NM_001613.2
ACTA2 NM_001141945.1
awk 'FNR==NR {... (4 Replies)
The below bash connects to a site, downloads a file, searches that file based of user input - could be multiple (all that seems to work). What I am not able to figure out is how to display on the screen match found or no match found" and write a file to a directory (C:\Users\cmccabe\Desktop\wget)... (4 Replies)
In the below file I am trying to grep or similar, all lines where only AF= is less than 0.4.. Thank you :).
grep
grep "AF=" ,+ .4 file
file
12 112036782 . T C 34.0248 PASS ... (3 Replies)
Having a little trouble getting this to work just right.
I have xml files that i want to split some data.
I have 2 <name> tags within the file
I would like to take only the first tag and split the data.
tag example.
From this.
TAB<Name>smith, john</Name>
to
TAB<Name>smith,... (8 Replies)
hi all,
trying this using shell/bash with sed/awk/grep
I have two files, one containing one column, the other containing multiple columns (comma delimited).
file1.txt
abc12345
def12345
ghi54321
...
file2.txt
abc1,text1,texta
abc,text2,textb
def123,text3,textc
gh,text4,textd... (6 Replies)
Discussion started by: shogun1970
6 Replies
LEARN ABOUT CENTOS
which
WHICH(1) General Commands Manual WHICH(1)NAME
which - shows the full path of (shell) commands.
SYNOPSIS
which [options] [--] programname [...]
DESCRIPTION
Which takes one or more arguments. For each of its arguments it prints to stdout the full path of the executables that would have been exe-
cuted when this argument had been entered at the shell prompt. It does this by searching for an executable or script in the directories
listed in the environment variable PATH using the same algorithm as bash(1).
This man page is generated from the file which.texinfo.
OPTIONS --all, -a
Print all matching executables in PATH, not just the first.
--read-alias, -i
Read aliases from stdin, reporting matching ones on stdout. This is useful in combination with using an alias for which itself. For
example
alias which='alias | which -i'.
--skip-alias
Ignore option `--read-alias', if any. This is useful to explicity search for normal binaries, while using the `--read-alias' option in
an alias or function for which.
--read-functions
Read shell function definitions from stdin, reporting matching ones on stdout. This is useful in combination with using a shell func-
tion for which itself. For example:
which() { declare -f | which --read-functions $@ }
export -f which
--skip-functions
Ignore option `--read-functions', if any. This is useful to explicity search for normal binaries, while using the `--read-functions'
option in an alias or function for which.
--skip-dot
Skip directories in PATH that start with a dot.
--skip-tilde
Skip directories in PATH that start with a tilde and executables which reside in the HOME directory.
--show-dot
If a directory in PATH starts with a dot and a matching executable was found for that path, then print "./programname" rather than the
full path.
--show-tilde
Output a tilde when a directory matches the HOME directory. This option is ignored when which is invoked as root.
--tty-only
Stop processing options on the right if not on tty.
--version,-v,-V
Print version information on standard output then exit successfully.
--help
Print usage information on standard output then exit successfully.
RETURN VALUE
Which returns the number of failed arguments, or -1 when no `programname' was given.
EXAMPLE
The recommended way to use this utility is by adding an alias (C shell) or shell function (Bourne shell) for which like the following:
[ba]sh:
which ()
{
(alias; declare -f) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@
}
export -f which
[t]csh:
alias which 'alias | /usr/bin/which --tty-only --read-alias --show-dot --show-tilde'
This will print the readable ~/ and ./ when starting which from your prompt, while still printing the full path when used from a script:
> which q2
~/bin/q2
> echo `which q2`
/home/carlo/bin/q2
BUGS
The HOME directory is determined by looking for the HOME environment variable, which aborts when this variable doesn't exist. Which will
consider two equivalent directories to be different when one of them contains a path with a symbolic link.
AUTHOR
Carlo Wood <carlo@gnu.org>
SEE ALSO bash(1)WHICH(1)