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Top Forums UNIX for Dummies Questions & Answers Is there any $PATH default setting? Post 302699477 by alister on Tuesday 11th of September 2012 07:58:44 PM
Old 09-11-2012
Directories in PATH are searched in the order they appear. If you want your bin directory to take precedence, it has to occur ahead of the directory containing the conflicting executable.

Alternatively, if the issue is only with this one binary, you could create an alias with an absolute path and leave PATH unmodified:
Code:
alias blastn=/home/yifangt/download-software/bin/blastn


Regards,
Alister
This User Gave Thanks to alister For This Post:
 

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SHTOOL-PATH.TMP(1)					      GNU Portable Shell Tool						SHTOOL-PATH.TMP(1)

NAME
shtool-path - GNU shtool command dealing with shell path variables SYNOPSIS
shtool path [-s|--suppress] [-r|--reverse] [-d|--dirname] [-b|--basename] [-m|--magic] [-p|--path path] str [str ...] DESCRIPTION
This command deals with shell $PATH variables. It can find a program through one or more filenames given by one or more str arguments. It prints the absolute filesystem path to the program displayed on "stdout" plus an exit code of 0 if it was really found. OPTIONS
The following command line options are available. -s, --suppress Supress output. Useful to only test whether a program exists with the help of the return code. -r, --reverse Transform a forward path to a subdirectory into a reverse path. -d, --dirname Output the directory name of str. -b, --basename Output the base name of str. -m, --magic Enable advanced magic search for ""perl"" and ""cpp"". -p, --path path Search in path. Default is to search in $PATH. EXAMPLE
# shell script awk=`shtool path -p "${PATH}:." gawk nawk awk` perl=`shtool path -m perl` cpp=`shtool path -m cpp` revpath=`shtool path -r path/to/subdir` HISTORY
The GNU shtool path command was originally written by Ralf S. Engelschall <rse@engelschall.com> in 1998 for Apache. It was later taken over into GNU shtool. SEE ALSO
shtool(1), which(1). 18-Jul-2008 shtool 2.0.8 SHTOOL-PATH.TMP(1)
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