Sponsored Content
Top Forums Shell Programming and Scripting Help with reformat data structure Post 302697009 by elixir_sinari on Thursday 6th of September 2012 02:38:13 AM
Old 09-06-2012
With a single sed:
Code:
sed 's/pir||/pir|/
t secrepl
b
:secrepl
s/\(pir|[^_]*\)_/\1|/' file

I am assuming that if both pir| and pir|| occur in a line, then the latter comes first and pir|| occurs only once in a line. If these assumptions don't hold good for your data, then you might need to change the sed command a bit. In that case, let me know.

Last edited by elixir_sinari; 09-06-2012 at 04:08 AM..
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

help reformat data with awk

I am trying to write an awk program to reformat a data table and convert the date to julian time. I have all the individual steps working, but I am having some issues joing them into one program. Can anyone help me out? Here is my code so far: # This is an awk program to convert the dates from... (4 Replies)
Discussion started by: climbak
4 Replies

2. Shell Programming and Scripting

Reformat Data (Perl)

I am new to Perl. I need to reformat a data file as the last part of a script I am working on. I am stuck on this. Here is the current format: CUSTOMER Filename 09/04/07-08:49 CUSTOMER Filename 09/04/07-08:52 CUSTOMER Filename 09/04/07-08:52 CUSTOMER2 Filename 09/04/07-08:49 CUSTOMER2... (3 Replies)
Discussion started by: flood
3 Replies

3. Shell Programming and Scripting

reformat data with a shell script

Can anyone help me with a shell script that can do the following: I have a data in fasta format (first line is the header, followed by a sequence of characters). >ALLLY GGCCCCTCGAGCCTCGAACCGGAACCTCCAAATCCGAGACGCTCTGCTTATGAGGACCTC GAAATATGCCGGCCAGTGAAAAAATCTTGTGGCTTTGAGGGCTTTTGGTTGGCCAGGGGC... (5 Replies)
Discussion started by: manishabh
5 Replies

4. Shell Programming and Scripting

Reformat the data of a file.

I have a file which have data like A.txt a 1Jan I am in a1. 1Jan I was born. 2Jan I am here. 3Jan I am in a3. b 1Jan I am in b1. c 2Jan I am in c2. d 2Jan I am in d2. 5jan I am in d5. date in the file might be vary evertime. (9 Replies)
Discussion started by: samkhu
9 Replies

5. Shell Programming and Scripting

Split, Search and Reformat by Data Group

Hi, I am writing just to share my appreciation for help I have received from this site in the past. In a previous post Split File by Data Group I received a lot of help with a troublesome awk script to reformat some complicated data blocks. What I learned really came in hand recently when I... (1 Reply)
Discussion started by: mkastin
1 Replies

6. Shell Programming and Scripting

Help with reformat data content

input file: hsa-miR-4726-5p Score hsa-miR-483-5p Score hsa-miR-125b-2* Score hsa-miR-4492 hsa-miR-4508 hsa-miR-4486 Score Desired output file: hsa-miR-4726-5p Score hsa-miR-483-5p Score hsa-miR-125b-2* Score hsa-miR-4492 hsa-miR-4508 hsa-miR-4486 Score ... (6 Replies)
Discussion started by: perl_beginner
6 Replies

7. Shell Programming and Scripting

Help with reformat input data

Input file: 58227131 50087390 57339526 40578034 65348841 55614853 64363217 44178559 Desired output file: 58227131 50087390 57339526 40578034 65348841 55614853 64363217 44178559 Command that I try: (4 Replies)
Discussion started by: perl_beginner
4 Replies

8. Shell Programming and Scripting

Reformat MLS Data - Use AWK?

I am helping my wife set up a real estate site and I am starting to integrate MLS listings. We are using a HostGator level 5 VPS running CentOS and have full root and SSH access to the VPS. Thus far I have automated the daily FTP download of listings from our MLS server using a little sh script.... (4 Replies)
Discussion started by: Chicago_Realtor
4 Replies

9. Shell Programming and Scripting

Data reformat and rearrangement problem asking

Input file: dependent general_process dependent general_process regulation general_process - - template component food component binding data_rearrangement binding data_rearrangement specific_activity data_rearrangement - ... (7 Replies)
Discussion started by: cpp_beginner
7 Replies

10. Shell Programming and Scripting

Help with reformat data set

Input file 4CL1 O24145 CoA1 4CL1 P31684 CoA1 4CL1 Q54P77 CoA_1 73 O36421 Unknown 4CL3 Q9S777 coumarate 4CL3 Q54P79 coumarate 4CL3 QP7932 coumarate Desired output result 4CL1 O24145#P31684 CoA1 4CL1 Q54P77 CoA_1 73 O36421 Unknown 4CL3 Q9S777#Q54P79#QP7932 coumarate I... (5 Replies)
Discussion started by: perl_beginner
5 Replies
NWBPSET(1)							      nwbpset								NWBPSET(1)

NAME
nwbpset - Create a bindery property or set its value SYNOPSIS
nwbpset [ -h ] [ -S server ] [ -U user name ] [ -P password | -n ] [ -C ] DESCRIPTION
nwbpset Reads a property specification from the standard input and creates and sets the corresponding property. The format is determined by the output of 'nwbpvalues -c'. nwbpset will hopefully become an important part of the bindery management suite of ncpfs, together with 'nwbpvalues -c'. See util/nwbpsecurity for an example. As another example, look at the following command line: nwbpvalues -t 1 -o supervisor -p user_defaults -c | sed '2s/.*/ME/'| sed '3s/.*/LOGIN_CONTROL/'| nwbpset With this command, the property user_defaults of the user object 'supervisor' is copied into the property login_control of the user object 'me'. nwbpvalues -t 1 -o me -p login_control -c | sed '9s/.*/ff/'| nwbpset This command disables the user object me. Feel free to contribute other examples! nwbpset looks up the file $HOME/.nwclient to find a file server, a user name and possibly a password. See nwclient(5) for more information. Please note that the access permissions of $HOME/.nwclient MUST be 600 for security reasons. OPTIONS
-h -h is used to print out a short help text. -S server server is the name of the server you want to use. -U user user is the user name to use for login. -P password password is the password to use for login. If neither -n nor -P are given, and the user has no open connection to the server, nwbpset prompts for a password. -n -n should be given if no password is required for the login. -C By default, passwords are converted to uppercase before they are sent to the server, because most servers require this. You can turn off this conversion by -C. AUTHORS
nwbpset was written by Volker Lendecke. See the Changes file of ncpfs for other contributors. nwbpset 8/7/1996 NWBPSET(1)
All times are GMT -4. The time now is 10:49 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy