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Top Forums Shell Programming and Scripting Merging columns based on one or more column in two files Post 302694501 by agama on Thursday 30th of August 2012 10:31:51 PM
Old 08-30-2012
If file one isn't too large, then this should work

Code:
# single pass across each file, but requires the entire first file
# to be held in memory which might not be realistic.
# order is preserved based on file2
awk '
    NR == FNR { cache[$1] = $0; next; }
    $1 in cache {
        printf( "%s", cache[$1] );
        $1 = "";
        print;
    }
' file1 file2 >output

If file1 is large (i.e. it's not practical to cache it in memory), then this is one way. May not be the most efficent, but it should work. The order of the output is sorted by field1.

Code:
# multiple passes across the data, but memory requirement is eliminated
# order of file2 is not preserved.
(
    sed 's/^/a /' file1
    sed 's/^/b /' file2
) | sort -k 2n,2 -k 1,1  awk '
    $1 == "a" {
        x = $2;
        $1 = "";
        cache = $0;
        next;
    }
    $2 == x {
        $1 = $2 ="";
        printf( "%s%s\n", substr( cache, 2 ), $0 );
    }
'

You could do this without the seds, and depend on the number of columns to determine if an unmatched pair exists, but this works without having to know the exact layout of either file, other than the desired column to compare.

Yes, multiple columns can be used to match.

Last edited by agama; 08-30-2012 at 11:38 PM.. Reason: small efficiency change.
 

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DIFF(1) 						      General Commands Manual							   DIFF(1)

NAME
diff - differential file comparator SYNOPSIS
diff [ -efbh ] file1 file2 DESCRIPTION
Diff tells what lines must be changed in two files to bring them into agreement. If file1 (file2) is `-', the standard input is used. If file1 (file2) is a directory, then a file in that directory whose file-name is the same as the file-name of file2 (file1) is used. The normal output contains lines of these forms: n1 a n3,n4 n1,n2 d n3 n1,n2 c n3,n4 These lines resemble ed commands to convert file1 into file2. The numbers after the letters pertain to file2. In fact, by exchanging `a' for `d' and reading backward one may ascertain equally how to convert file2 into file1. As in ed, identical pairs where n1 = n2 or n3 = n4 are abbreviated as a single number. Following each of these lines come all the lines that are affected in the first file flagged by `<', then all the lines that are affected in the second file flagged by `>'. The -b option causes trailing blanks (spaces and tabs) to be ignored and other strings of blanks to compare equal. The -e option produces a script of a, c and d commands for the editor ed, which will recreate file2 from file1. The -f option produces a similar script, not useful with ed, in the opposite order. In connection with -e, the following shell program may help maintain multiple versions of a file. Only an ancestral file ($1) and a chain of version-to-version ed scripts ($2,$3,...) made by diff need be on hand. A `latest version' appears on the standard output. (shift; cat $*; echo '1,$p') | ed - $1 Except in rare circumstances, diff finds a smallest sufficient set of file differences. Option -h does a fast, half-hearted job. It works only when changed stretches are short and well separated, but does work on files of unlimited length. Options -e and -f are unavailable with -h. FILES
/tmp/d????? /usr/lib/diffh for -h SEE ALSO
cmp(1), comm(1), ed(1) DIAGNOSTICS
Exit status is 0 for no differences, 1 for some, 2 for trouble. BUGS
Editing scripts produced under the -e or -f option are naive about creating lines consisting of a single `.'. DIFF(1)
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