Thanks elixir_sinari and pamu.
When I run the code I only get the first match. I need all matches in file 1. Any suggestions?
Thanks in advance.
I think this is the same as you asked...
Code:
$ awk 'FNR==NR{a[toupper($0)]=1;next}($3 in a)||FNR==1' file2 file1
Number SNP ID dbSNP RS ID Chromosome Result_Call Physical Position
786872 SNP_A-8575125 RS10458597 1 AA 564621
920528 SNP_A-8709646 RS12565286 1 AA 721290
710267 SNP_A-8497791 RS12082473 1 AA 740857
Hi,
From the pattern mentioned below remove lines based on pattern range.
Conditions
1 Look For all lines starting with ALTER TABLE and Ending with ; and contains the word MOVE.I wanto to remove these lines from the file sample below.
Note : The above pattern list could be found in... (1 Reply)
Hi,
I would like to know how can I get lines from a text file that match no more than 2 '>'. Example:
Input file:
a >cr1 4 a>b b>c
a >cr2 5 a>b
Output file:
a >cr2 5 a>b
Thanks in advance (2 Replies)
I have a very large file (10,000,000 lines), that contains a sample id and a property of that sample. I have another file that contains around 1,000,000 lines with sample ids that I want to remove from the original file (create a new file without these lines).
I know how to do this in Perl, but it... (9 Replies)
In the past I needed a help with the problem how to search for pattern after the occurence of another pattern which is described in this thread:
https://www.unix.com/shell-programmin...-pattern1.html
Now I would need something quite similar, only the pattern which is to be searched must be... (3 Replies)
Hi,
I have a file, which contains the following log data.
I am trying to print fromt he file the following data:
I have tried using sed, but I am getting from the first pattern
Thanks for your help. (5 Replies)
I have an output file which gives me the timely status of a server.
Sample file:
March 11 2014
21:10, 1, 2, 3, 4, 5, 6, 7, 8, 9, x, y, z...
21:05, 1, 2, 3, 4, 5, 6, 7, 8, 9, x, y, z...
21:00, 1, 2, 3, 4,... (3 Replies)
Hi,
i have been trying to extract multiple lines based on two different patterns as below:-
file1
@jkm|kdo|aas012|192.2.3.1 blablbalablablkabblablabla
sjfdsakfjladfjefhaghfagfkafagkjsghfalhfk
fhajkhfadjkhfalhflaffajkgfajkghfajkhgfkf
jahfjkhflkhalfdhfwearhahfl
@jkm|sdf|wud08q|168.2.1.3... (8 Replies)
In the awk below I am trying to output those lines that Match between file1 and file2, those Missing in file1, and those missing in file2. Using each $1,$2,$4,$5 value as a key to match on, that is if those 4 fields are found in both files the match, but if those 4 fields are not found then missing... (0 Replies)
Discussion started by: cmccabe
0 Replies
LEARN ABOUT BSD
join
JOIN(1) General Commands Manual JOIN(1)NAME
join - relational database operator
SYNOPSIS
join [ options ] file1 file2
DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard
input is used.
File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in
each line.
There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con-
sists of the common field, then the rest of the line from file1, then the rest of the line from file2.
Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis-
carded.
These options are recognized:
-an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2.
-e s Replace empty output fields by string s.
-jn m Join on the mth field of file n. If n is missing, use the mth field in each file.
-o list
Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a
field number.
-tc Use character c as a separator (tab character). Every appearance of c in a line is significant.
SEE ALSO sort(1), comm(1), awk(1)BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort.
The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous.
7th Edition April 29, 1985 JOIN(1)