Sponsored Content
Full Discussion: script for multiple files
Top Forums Shell Programming and Scripting script for multiple files Post 302692823 by pamu on Tuesday 28th of August 2012 06:30:13 AM
Old 08-28-2012
Try something like this..

Code:
for i in *.bigWig
do
file_name=$(echo $i | sed 's/.bigWig/.bedGraph/g')
bigWigToBedGraph $i $file_name
done


Last edited by pamu; 08-28-2012 at 07:38 AM..
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Need a script to delete multiple files

Hello, I am working with about 500,000 text files and 90% of them are duplicates. I need a way to delete the duplicate ones. The files are email messages with the following file name examples: 20040129-1457 This is the Subject line.txt 20040129-1457 This is the Subject line-1.txt... (3 Replies)
Discussion started by: navycow
3 Replies

2. Shell Programming and Scripting

perl script on multiple files

I have a script that runs on one file (at a time). like this: $> perl myscript.pl filename > output How can I run it on >6000 files and have the output sent out into slightly modified file name $> perl myscript 6000files> output6000files.new extension Thanks in anticipation (4 Replies)
Discussion started by: aritakum
4 Replies

3. Shell Programming and Scripting

Script to Compare Multiple Files.

Hello Everyone, I have strange situation and unable to think of a solution. Situation is as follow, FolderA contrain following files, File1 File2 File3 File4 I want to compare as follow compare File1 with File2 --> Result Same/Diffrent compare File1 with File3 --> Result... (1 Reply)
Discussion started by: ZalimJin
1 Replies

4. Shell Programming and Scripting

Script to find & replace a multiple lines string across multiple php files and subdirectories

Hey guys. I know pratically 0 about Linux, so could anyone please give me instructions on how to accomplish this ? The distro is RedHat 4.1.2 and i need to find and replace a multiple lines string in several php files across subdirectories. So lets say im at root/dir1/dir2/ , when i execute... (12 Replies)
Discussion started by: spfc_dmt
12 Replies

5. Shell Programming and Scripting

Extracting non multiple files via script

Hi, Can somebody help me? I am testing a demo with the given function PATH525="/uscms/home/emily/READme/extra/data/" TEMP=temp FileName=DataFileName CopyFiles() { # PATHNAME="$paths" ... (9 Replies)
Discussion started by: emily
9 Replies

6. UNIX for Dummies Questions & Answers

Run one script on multiple files and print out multiple files.

How can I run the following command on multiple files and print out the corresponding multiple files. perl script.pl genome.gff 1.txt > 1.gff However, there are multiples files of 1.txt, from 1----100.txt Thank you so much. No duplicate posting! Continue here. (0 Replies)
Discussion started by: grace_shen
0 Replies

7. Shell Programming and Scripting

Run one script on multiple files and print out multiple files.

How can I Run one script on multiple files and print out multiple files. FOR EXAMPLE i want to run script.pl on 100 files named 1.txt ....100.txt under same directory and print out corresponding file 1.gff ....100.gff.THANKS (4 Replies)
Discussion started by: grace_shen
4 Replies

8. Shell Programming and Scripting

Script to read multiple files...

I have 7 text files of varying sizes for each month of System Maintenance done during the 2013 calendar year (Jan. 134 jobs, Feb. 84 jobs, Apr. 594 jobs, May 158 jobs, July 69 jobs, Aug. 1 job, Oct. 102 jobs) and I have another text file which contains everything from those 7 files. Each of the... (8 Replies)
Discussion started by: CyberOptiq
8 Replies

9. Shell Programming and Scripting

Run script on multiple files

I have a script that I need to run on one file at a time. Unfortunately using for i in F* or cat F* is not possible. When I run the script using that, it jumbles the files and they are out of order. Here is the script: gawk '{count++; keyword = $1} END { for (k in count) {if (count == 2)... (18 Replies)
Discussion started by: newbie2010
18 Replies

10. Shell Programming and Scripting

Renaming multiple files in sftp server in a get files script

Hi, In sftp script to get files, I have to rename all the files which I am picking. Rename command does not work here. Is there any way to do this? I am using #!/bin/ksh For eg: sftp user@host <<EOF cd /path get *.txt rename *.txt *.txt.done ... (7 Replies)
Discussion started by: jhilmil
7 Replies
send(n) 						       Tk Built-In Commands							   send(n)

__________________________________________________________________________________________________________________________________________________

NAME
send - Execute a command in a different application SYNOPSIS
send ?options? app cmd ?arg arg ...? _________________________________________________________________ DESCRIPTION
This command arranges for cmd (and args) to be executed in the application named by app. It returns the result or error from that command execution. App may be the name of any application whose main window is on the display containing the sender's main window; it need not be within the same process. If no arg arguments are present, then the command to be executed is contained entirely within the cmd argument. If one or more args are present, they are concatenated to form the command to be executed, just as for the eval command. If the initial arguments of the command begin with "-" they are treated as options. The following options are currently defined: -async Requests asynchronous invocation. In this case the send command will complete immediately without waiting for cmd to complete in the target application; no result will be available and errors in the sent command will be ignored. If the target application is in the same process as the sending application then the -async option is ignored. -displayof pathName Specifies that the target application's main window is on the display of the window given by pathName, instead of the display con- taining the application's main window. -- Serves no purpose except to terminate the list of options. This option is needed only if app could contain a leading "-" character. APPLICATION NAMES
The name of an application is set initially from the name of the program or script that created the application. You can query and change the name of an application with the tk appname command. DISABLING SENDS
If the send command is removed from an application (e.g. with the command rename send {}) then the application will not respond to incom- ing send requests anymore, nor will it be able to issue outgoing requests. Communication can be reenabled by invoking the tk appname com- mand. SECURITY
The send command is potentially a serious security loophole. On Unix, any application that can connect to your X server can send scripts to your applications. These incoming scripts can use Tcl to read and write your files and invoke subprocesses under your name. Host-based access control such as that provided by xhost is particularly insecure, since it allows anyone with an account on particular hosts to con- nect to your server, and if disabled it allows anyone anywhere to connect to your server. In order to provide at least a small amount of security, Tk checks the access control being used by the server and rejects incoming sends unless (a) xhost-style access control is enabled (i.e. only certain hosts can establish connections) and (b) the list of enabled hosts is empty. This means that applications cannot con- nect to your server unless they use some other form of authorization such as that provide by xauth. Under Windows, send is currently dis- abled. Most of the functionality is provided by the dde command instead. EXAMPLE
This script fragment can be used to make an application that only runs once on a particular display. if {[tk appname FoobarApp] ne "FoobarApp"} { send -async FoobarApp RemoteStart $argv exit } # The command that will be called remotely, which raises # the application main window and opens the requested files proc RemoteStart args { raise . foreach filename $args { OpenFile $filename } } KEYWORDS
application, dde, name, remote execution, security, send Tk 4.0 send(n)
All times are GMT -4. The time now is 01:51 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy