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Top Forums UNIX for Dummies Questions & Answers Comparing multiple fields from 2 files uing awk Post 302688919 by sshetty on Monday 20th of August 2012 12:38:33 PM
Old 08-20-2012
Thanks!!!

Thanks a lot!!!! Your code worked perfectly for my test file.
However the file sizes are not the same. Also there is no one to one correspondence between the lines in the 2 files.
I would like each row of file1 to search through every row of file 2 and return all values in file 2 which were within the range of the single line in file 1.
For example:
1st row of file1
chr1 201 301

File2 (all rows)
chr1 220 230 abc
chr2 400 500 xyz
chr1 290 300 pqr

Result
chr1 201 301 abc
chr1 201 301 pqr

since both of these are within the range of 2 rows in file2. Therefore I was thinking of loading the file2 in an array and then looping over this array with each row of file1.

I would greatly appreciate any input.
Thanks once again.
 

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DIFF(1) 						      General Commands Manual							   DIFF(1)

NAME
diff - print differences between two files SYNOPSIS
diff [-c | -e | -C n] [-br]file1 file2 OPTIONS
-C n Produce output that contains n lines of context -b Ignore white space when comparing -c Produce output that contains three lines of context -e Produce an ed-script to convert file1 into file2 -r Apply diff recursively to files and directories of EXAMPLES
diff file1 file2 # Print differences between 2 files diff -C 0 file1 file2 # Same as above diff -C 3 file1 file2 # Output three lines of context with every diff -c file1 file2 # Same diff /etc /dev # Compares recursively the directories /etc and /dev diff passwd /etc # Compares ./passwd to /etc/passwd DESCRIPTION
the same name, when file1 and file2 are both directories" difference encountered" Diff compares two files and generates a list of lines telling how the two files differ. Lines may not be longer than 128 characters. If the two arguments on the command line are both directories, diff recursively steps through all subdirectories comparing files of the same name. If a file name is found only in one directory, a diagnostic message is written to stdout. A file that is of either block special, character special or FIFO special type, cannot be compared to any other file. On the other hand, if there is one directory and one file given on the command line, diff tries to compare the file with the same name as file in the directory directory. SEE ALSO
cdiff(1), cmp(1), comm(1), patch(1). DIFF(1)
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