I need to align text from a file that has columns seperated by spaces and commas. Any ideas?
Text is similar to this.
File Name is Test.
05/14/06 13:46:56.575 ,TEST,5,123,1234,123,12345,12,12.2,2.1,4.5,5.23
05/14/06 13:49:58.009 ,TEST,6,456,456.7,45,4.56,453,34,54.3,3.2,6.456 (9 Replies)
Hi All !!!
I have an HTML file whose contents are as below:
<html>
<body>
<title>This is a test file</title>
<p>PLEASE ALIGN
ME IN ONE
LINE. TEXT....</p>
<h2>This is a Test file</h2>
<p>PLEASE ALIGN
ME IN ONE
LINE. TEXT....</p>
</body>
</html> (2 Replies)
Hi all
I am doing some matching apache access log processing.Now i want a some way that i can start log search/process from where it left.Can any one give me ideads. (1 Reply)
Hi All,
I have a file contains below contents, "interfacename/subnet: public (or) interfacename/subnet:cluster_interconnect"
"en2"/10.185.81.0:cluster_interconnect,"en5"/10.185.81.0:cluster_interconnect,"en6"/169.181.146.0:public... (6 Replies)
Does anyone have any advise on trying to clean up a full filesystem? I can't rm any files because of the follow:
not removed: No space left on device
Any help would be very much appreciated. (10 Replies)
I'm working on a bash script to finish uploading a file.
I need a way to get $filesize so that "restart $filesize" will work.
Here is my script:
ftp -n -v <<END_SCRIPT
open ftp.$domain
user $user@$domain $password
size $file
restart $filesize
put $file
quit
END_SCRIPTWayne Sallee... (9 Replies)
hi all,
trying this using shell/bash with sed/awk/grep
I have two files, one containing one column, the other containing multiple columns (comma delimited).
file1.txt
abc12345
def12345
ghi54321
...
file2.txt
abc1,text1,texta
abc,text2,textb
def123,text3,textc
gh,text4,textd... (6 Replies)
Discussion started by: shogun1970
6 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)