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Top Forums Shell Programming and Scripting 3 column .csv --> correlation matrix; awk, perl? Post 302669943 by shamrock on Wednesday 11th of July 2012 12:38:39 PM
Old 07-11-2012
I am not sure why you are getting incorrect results as the output on my system is exactly what you want...i changed the awk script slightly so it uses if else statements instead of the conditional operator...thogh i am not sure why that would fix things on your system but it helps if you copy and paste correctly...
Code:
awk -F, '{
    OFS = ","
    if (t) {
       if (l != $1)
          t = t OFS $1
    } else t = OFS $1
    x[$1] = x[$1] ? x[$1] OFS $NF : $NF
    l = $1
} END {
    print t
    for (i in x) print i, x[i]
}' file

This User Gave Thanks to shamrock For This Post:
 

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AWK(1)							    BSD General Commands Manual 						    AWK(1)

NAME
awk -- pattern-directed scanning and processing language SYNOPSIS
awk [-F fs] [-v var=value] [-safe] [-d[N]] [prog | -f filename] file ... awk -version DESCRIPTION
awk is the Bell Labs' implementation of the AWK programming language as described in the The AWK Programming Language by A. V. Aho, B. W. Kernighan, and P. J. Weinberger. awk scans each input file for lines that match any of a set of patterns specified literally in prog or in one or more files specified as -f filename. With each pattern there can be an associated action that will be performed when a line of a file matches the pattern. Each line is matched against the pattern portion of every pattern-action statement; the associated action is performed for each matched pattern. The file name - means the standard input. Any file of the form var=value is treated as an assignment, not a filename, and is executed at the time it would have been opened if it were a filename. The options are as follows: -d[N] Set debug level to specified number N. If the number is omitted, debug level is set to 1. -f filename Read the AWK program source from specified file filename, instead of the first command line argument. Multiple -f options may be specified. -F fs Set the input field separator FS to the regular expression fs. -mr NNN, -mf NNN Obsolete, no longer needed options. Set limit on maximum record or fields number. -safe Potentially unsafe functions such as system() make the program abort (with a warning message). -v var=value Assign the value value to the variable var before prog is executed. Any number of -v options may be present. -version Print awk version on standard output and exit. An input line is normally made up of fields separated by white space, or by regular expression FS. The fields are denoted $1, $2, ..., while $0 refers to the entire line. If FS is null, the input line is split into one field per character. A pattern-action statement has the form pattern { action } A missing { action } means print the line; a missing pattern always matches. Pattern-action statements are separated by newlines or semi- colons. An action is a sequence of statements. Statements are terminated by semicolons, newlines or right braces. An empty expression-list stands for $0. String constants are quoted " ", with the usual C escapes recognized within. Expressions take on string or numeric values as appro- priate, and are built using the Operators (see next subsection). Variables may be scalars, array elements (denoted x[i]) or fields. Vari- ables are initialized to the null string. Array subscripts may be any string, not necessarily numeric; this allows for a form of associative memory. Multiple subscripts such as [i,j,k] are permitted; the constituents are concatenated, separated by the value of SUBSEP. Operators awk operators, in order of decreasing precedence, are: (...) Grouping $ Field reference ++ -- Increment and decrement, can be used either as postfix or prefix. ^ Exponentiation (the ** form is also supported, and **= for the assignment operator). + - ! Unary plus, unary minus and logical negation. * / % Multiplication, division and modulus. + - Addition and subtraction. space String concatenation. < > <= >= != == Regular relational operators ~ !~ Regular expression match and not match in Array membership && Logical AND || Logical OR ?: C conditional expression. This is used as expr1 ? expr2 : expr3 . If expr1 is true, the result value is expr2, otherwise it is expr3. Only one of expr2 and expr3 is evaluated. = += -= *= /= %= ^= Assignment and Operator-Assignment Control Statements The control statements are as follows: if ( expression ) statement [else statement] while ( expression ) statement for ( expression ; expression ; expression ) statement for ( var in array ) statement do statement while ( expression ) break continue delete array [expression] delete array exit [expression] expression return [expression] { [statement ...] } I/O Statements The input/output statements are as follows: close(expr) Closes the file or pipe expr. Returns zero on success; otherwise nonzero. fflush(expr) Flushes any buffered output for the file or pipe expr. Returns zero on success; otherwise nonzero. getline [var] Set var (or $0 if var is not specified) to the next input record from the current input file. getline returns 1 for a successful input, 0 for end of file, and -1 for an error. getline [var] < file Set var (or $0 if var is not specified) to the next input record from the specified file file. expr | getline Pipes the output of expr into getline; each call of getline returns the next line of output from expr. next Skip remaining patterns on this input line. nextfile Skip rest of this file, open next, start at top. print [expr-list] [> file] The print statement prints its arguments on the standard output (or to a file if > file or to a pipe if | expr is present), separated by the current output field separator OFS, and terminated by the output record separator ORS. Both file and expr may be literal names or parenthesized expressions; identical string values in different statements denote the same open file. printf format [, expr-list] [> file] Format and print its expression list according to format. See printf(3) for list of supported formats and their meaning. Mathematical and Numeric Functions AWK has the following mathematical and numerical functions built-in: atan2(x, y) Returns the arctangent of x / y in radians. See also atan2(3). cos(expr) Computes the cosine of expr, measured in radians. See also cos(3). exp(expr) Computes the exponential value of the given argument expr. See also exp(3). int(expr) Truncates expr to integer. log(expr) Computes the value of the natural logarithm of argument expr. See also log(3). rand() Returns random number between 0 and 1. sin(expr) Computes the sine of expr, measured in radians. See also sin(3). sqrt(expr) Computes the non-negative square root of expr. See also sqrt(3). srand([expr]) Sets seed for random number generator ( rand()) and returns the previous seed. String Functions AWK has the following string functions built-in: gensub(r, s, h, [t]) Search the target string t for matches of the regular expression r. If h is a string beginning with g or G, then replace all matches of r with s. Otherwise, h is a number indicating which match of r to replace. If no t is supplied, $0 is used instead. Unlike sub() and gsub(), the modified string is returned as the result of the function, and the original target is not changed. Note that the sequences within replacement string s supported by GNU awk are not supported at this moment. gsub(r, t, [s]) same as sub() except that all occurrences of the regular expression are replaced; sub() and gsub() return the number of replacements. index(s, t) the position in s where the string t occurs, or 0 if it does not. length([string]) the length of its argument taken as a string, or of $0 if no argument. match(s, r) the position in s where the regular expression r occurs, or 0 if it does not. The variables RSTART and RLENGTH are set to the posi- tion and length of the matched string. split(s, a, [fs]) splits the string s into array elements a[1], a[2], ..., a[n], and returns n. The separation is done with the regular expression fs or with the field separator FS if fs is not given. An empty string as field separator splits the string into one array element per character. sprintf(fmt, expr, ...) Returns the string resulting from formatting expr according to the printf(3) format fmt. sub(r, t, [s]) substitutes t for the first occurrence of the regular expression r in the string s. If s is not given, $0 is used. substr(s, m, [n]) Returns the at most n-character substring of s starting at position m, counted from 1. If n is omitted, the rest of s is returned. tolower(str) returns a copy of str with all upper-case characters translated to their corresponding lower-case equivalents. toupper(str) returns a copy of str with all lower-case characters translated to their corresponding upper-case equivalents. Time Functions This awk provides the following two functions for obtaining time stamps and formatting them: systime() Returns the value of time in seconds since the start of Unix Epoch (Midnight, January 1, 1970, Coordinated Universal Time). See also time(3). strftime([format [, timestamp]]) Formats the time timestamp according to the string format. timestamp should be in same form as value returned by systime(). If timestamp is missing, current time is used. If format is missing, a default format equivalent to the output of date(1) would be used. See the specification of ANSI C strftime(3) for the format conversions which are supported. Other built-in functions system(cmd) executes cmd and returns its exit status Patterns Patterns are arbitrary Boolean combinations (with ! || &&) of regular expressions and relational expressions. Regular expressions are as in egrep(1). Isolated regular expressions in a pattern apply to the entire line. Regular expressions may also occur in relational expressions, using the operators ~ and !~. / re / is a constant regular expression; any string (constant or variable) may be used as a regular expres- sion, except in the position of an isolated regular expression in a pattern. A pattern may consist of two patterns separated by a comma; in this case, the action is performed for all lines from an occurrence of the first pattern though an occurrence of the second. A relational expression is one of the following: expression matchop regular-expression expression relop expression expression in array-name (expr, expr,... ) in array-name where a relop is any of the six relational operators in C, and a matchop is either ~ (matches) or !~ (does not match). A conditional is an arithmetic expression, a relational expression, or a Boolean combination of these. The special patterns BEGIN and END may be used to capture control before the first input line is read and after the last. BEGIN and END do not combine with other patterns. Built-in Variables Variable names with special meanings: ARGC argument count, assignable ARGV argument array, assignable; non-null members are taken as filenames CONVFMT conversion format used when converting numbers (default "%.6g") ENVIRON array of environment variables; subscripts are names. FILENAME the name of the current input file FNR ordinal number of the current record in the current file FS regular expression used to separate fields; also settable by option -F fs. NF number of fields in the current record NR ordinal number of the current record OFMT output format for numbers (default "%.6g" ) OFS output field separator (default blank) ORS output record separator (default newline) RS input record separator (default newline) RSTART Position of the first character matched by match(); 0 if not match. RLENGTH Length of the string matched by match(); -1 if no match. SUBSEP separates multiple subscripts (default 034) Functions Functions may be defined (at the position of a pattern-action statement) thus: function foo(a, b, c) { ...; return x } Parameters are passed by value if scalar and by reference if array name; functions may be called recursively. Parameters are local to the function; all other variables are global. Thus local variables may be created by providing excess parameters in the function definition. EXAMPLES
length($0) > 72 Print lines longer than 72 characters. { print $2, $1 } Print first two fields in opposite order. BEGIN { FS = ",[ ]*|[ ]+" } { print $2, $1 } Same, with input fields separated by comma and/or blanks and tabs. { s += $1 } END { print "sum is", s, " average is ", s/NR } Add up first column, print sum and average. /start/, /stop/ Print all lines between start/stop pairs. BEGIN { # Simulate echo(1) for (i = 1; i < ARGC; i++) printf "%s ", ARGV[i] printf " " exit } SEE ALSO
egrep(1), lex(1), sed(1), atan2(3), cos(3), exp(3), log(3), sin(3), sqrt(3), strftime(3), time(3) A. V. Aho, B. W. Kernighan, P. J. Weinberger, The AWK Programming Language, Addison-Wesley, 1988. ISBN 0-201-07981-X AWK Language Programming, Edition 1.0, published by the Free Software Foundation, 1995 HISTORY
nawk has been the default system awk since NetBSD 2.0, replacing the previously used GNU awk. BUGS
There are no explicit conversions between numbers and strings. To force an expression to be treated as a number add 0 to it; to force it to be treated as a string concatenate "" to it. The scope rules for variables in functions are a botch; the syntax is worse. BSD
May 25, 2008 BSD
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