In a separate (tab/space delimited) file, I have indexes as follows:
Code:
someseq 5 10
another seq 1 12
seq3450 3 10
etc.
(above column 1 is sequence name, column 2 sequence start position and column 3 sequence end position)
I want to extract sequences from file 1 based on the indexes on file 2. For example, 'someseq 5 10' will extract characters 5-10 from 'someseq' of file 1.
Example output is:
I am trying to reset the IP address on a Unix HP box here in my office and I am stuck in this EM100 mode and cant issue any commands. Any help would be great. By the way I no zero about unix. Thanks (0 Replies)
Hi all,
make_lofs /.cdrom/<something>/<something> 1
what does this instruction mean?
Note:both the "something" are obviously different .
I would like to know what that 1 means, the rest of the instruction is clear!!
Thanks (6 Replies)
hi, on my sol9 box i create my backup using the below command:
/usr/sbin/ufsdump 0uf /dev/rmt/0n /u1
/usr/sbin/ufsdump 0uf /dev/rmt/0n /u2
/usr/sbin/ufsdump 0uf /dev/rmt/0n /u3
/usr/sbin/ufsdump 0uf /dev/rmt/0n /u4
now on the new sol10 box, to restore i use this commands:
cd /u1... (3 Replies)
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
i have log files that represent names, times and countries,
each name come once in country but may in diff times
i need at end each name visited which country and its
USA | Tony | 12:25:22:431
Italy | Tony | 09:33:11:212 ****
Italy| John | 08:22:12:349
France | Adam | 14:22:42:981... (2 Replies)
i want to extract specific region of interest from big file. i have only start position, end position and seq id, see my query is:
I have file1 is this
>GL3482.1
GAACTTGAGATCCGGGGA
GCAGTGGATCTCCACCAG
CGGCCAGAACTGGTGCAC
CTCCAGGCCAGCCTCGTC
CTGCGTGTC
>GL3550.1... (14 Replies)
Hello, here I am posting my query again with modified data input files.
see my query is :
i have two input files file1 and file2.
file1 is smalldata.fasta
>gi|546671471|gb|AWWX01449637.1| Bubalus bubalis breed Mediterranean WGS:AWWX01:contig449636, whole genome shotgun sequence... (20 Replies)
Discussion started by: harpreetmanku04
20 Replies
LEARN ABOUT V7
truncate
TRUNCATE(1) User Commands TRUNCATE(1)NAME
truncate - shrink or extend the size of a file to the specified size
SYNOPSIS
truncate OPTION... FILE...
DESCRIPTION
Shrink or extend the size of each FILE to the specified size
A FILE argument that does not exist is created.
If a FILE is larger than the specified size, the extra data is lost. If a FILE is shorter, it is extended and the extended part (hole)
reads as zero bytes.
Mandatory arguments to long options are mandatory for short options too.
-c, --no-create
do not create any files
-o, --io-blocks
treat SIZE as number of IO blocks instead of bytes
-r, --reference=RFILE
base size on RFILE
-s, --size=SIZE
set or adjust the file size by SIZE bytes
--help display this help and exit
--version
output version information and exit
The SIZE argument is an integer and optional unit (example: 10K is 10*1024). Units are K,M,G,T,P,E,Z,Y (powers of 1024) or KB,MB,... (pow-
ers of 1000).
SIZE may also be prefixed by one of the following modifying characters: '+' extend by, '-' reduce by, '<' at most, '>' at least, '/' round
down to multiple of, '%' round up to multiple of.
AUTHOR
Written by Padraig Brady.
REPORTING BUGS
GNU coreutils online help: <http://www.gnu.org/software/coreutils/>
Report truncate translation bugs to <http://translationproject.org/team/>
COPYRIGHT
Copyright (C) 2017 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.
SEE ALSO dd(1), truncate(2), ftruncate(2)
Full documentation at: <http://www.gnu.org/software/coreutils/truncate>
or available locally via: info '(coreutils) truncate invocation'
GNU coreutils 8.28 January 2018 TRUNCATE(1)
07-02-2012
