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Full Discussion: Filtering files
Top Forums Shell Programming and Scripting Filtering files Post 302637369 by alecapo on Tuesday 8th of May 2012 07:20:37 PM
Old 05-08-2012
Quote:
Originally Posted by Corona688
Ah, I see.
Code:
awk 'NR==FNR { A[$1]++; next }; $1 in A' names.txt masterfile.txt > output.txt

Thanks @Corona688. It separates them but it doesn't maintain the order of the markers as in names.txt. They are in alphabetical order instead.

@methyl I'm not quite sure I understand your question.. They are not in the same order.. that's why I want them to be filtered. The markers in masterfile are in alphabetical order, but those in names.txt are not. I need them in an specific order (as in names.txt) since it represents the order in the chromosome.Blank rows for missing names are not a problem.. I expect some of them missing.

So it could be like

Code:
masterfile.txt
AY388580_a   0   0   1   2   1   2   1   2   1         
AY388582_a   3   3   1   3   1   3   1   3   1         
AY388585_a   1   1   1   3   1   3   1   1   1         
AY388587_a   1   1   1   1   1   1   1   3   1         
G388588_a   1   3   1   1   1   1   1   1   1         
EY388589_a   1   1   1   1   1   1   1   1   1         
ZZ388591_a   1   1   1   2   1   2   2   2   1

names.txt

ZZ388591_a
G388588_a 
GCR_33245   
AY388580_a   


output.txt
ZZ388591_a   1   1   1   2   1   2   2   2   1
G388588_a   1   3   1   1   1   1   1   1   1 

AY388580_a   0   0   1   2   1   2   1   2   1

Sorry for bothering you guys..
Last edited by alecapo; 05-08-2012 at 08:28 PM..
 

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LEARN ABOUT REDHAT

ppmtosixel

ppmtosixel(1)						      General Commands Manual						     ppmtosixel(1)

NAME

       ppmtosixel - convert a portable pixmap into DEC sixel format

SYNOPSIS

       ppmtosixel [-raw] [-margin] [ppmfile]

DESCRIPTION

       Reads  a  portable  pixmap  as input.  Produces sixel commands (SIX) as output.	The output is formatted for color printing, e.g. for a DEC
       LJ250 color inkjet printer.

       If RGB values from the PPM file do not have maxval=100, the RGB values are rescaled.  A printer control header and a color assignment table
       begin the SIX file.  Image data is written in a compressed format by default.  A printer control footer ends the image file.

OPTIONS

       -raw   If  specified,  each  pixel  will  be explicitly described in the image file.  If -raw is not specified, output will default to com-
	      pressed format in which identical adjacent pixels are replaced by "repeat pixel" commands.  A raw file is often an order	of  magni-
	      tude larger than a compressed file and prints much slower.

       -margin
	      If  -margin  is not specified, the image will be start at the left margin (of the window, paper, or whatever).  If -margin is speci-
	      fied, a 1.5 inch left margin will offset the image.

PRINTING

       Generally, sixel files must reach the printer unfiltered.  Use the lpr -x option or cat filename > /dev/tty0?.

BUGS

       Upon rescaling, truncation of the least significant bits of RGB values may result in poor color conversion.  If the original PPM maxval was
       greater	than  100,  rescaling  also reduces the image depth.  While the actual RGB values from the ppm file are more or less retained, the
       color palette of the LJ250 may not match the colors on your screen.  This seems to be a printer limitation.

SEE ALSO

       ppm(5)

AUTHOR

       Copyright (C) 1991 by Rick Vinci.

								   26 April 1991						     ppmtosixel(1)
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