05-02-2012
Problem there is, what defines a field? Are those tabs? Because line 1 is 6 columns if you use space delimiter because of the space in "Dózsa György"
If they are tabs: awk -F'\t' 'NF==5'
If they are spaces: awk -F' *' 'NF==5'
That's 3 spaces before the asterisks, then each field is split by 2 or more spaces..
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi I have a file that I want to bin.
I am using this code:
awk -F'\t' -v r=40 '{for(i=r;i<=NF;i+=r){for(j=0;j<r;j++){sum+=$(i-j)}printf "%s ", sum/r;sum=0}; printf "\n"}' file1 > file2
So basically what this code does is that it will averaging every 40 columns (creating bins of 40). But... (2 Replies)
Discussion started by: phil_heath
2 Replies
2. Shell Programming and Scripting
Hi All,
I would like to ask help on how can i achieve below output.
Inputfile:
Oct11,apa1-daily,01:25:01
Oct11,apa2-daily,01:45:23
Oct12,apa1-daily,02:30:11
Oct12,apa2-daily,01:55:01
Oct13,apa1-off,01:43:34
Oct13,apa2-off,01:22:04
Desired output:
Clients ... (3 Replies)
Discussion started by: mars101
3 Replies
3. Shell Programming and Scripting
Hi
My pipe delimited .txt file contains rows with 10 columns.
Can anyone advise how I output to file only those rows with the letters ‘ci'
as the first 2 characters in the 3rd column ?
Many thanks (4 Replies)
Discussion started by: malts18
4 Replies
4. UNIX for Dummies Questions & Answers
Hi,
I have a tab delimited text file with multiple columns. The second and third columns include numbers that have not been sorted. I want to extract rows where the second column includes a value between -0.01 and 0.01 (including both numbers) and the first third column includes a value between... (1 Reply)
Discussion started by: evelibertine
1 Replies
5. Shell Programming and Scripting
Hi I have a matrix with n rows and m columns like below example. i want to extract all the pairs with values <200.
Input
A B C D
A 100 206 51 300
B 206 100 72 48
C 351 22 100 198
D 13 989 150 100
Output format
A,A:200
A,C:51
B,B:100... (2 Replies)
Discussion started by: anurupa777
2 Replies
6. Shell Programming and Scripting
I have a file some thing like this:
GN Name=YWHAB;
RC TISSUE=Keratinocyte;
RC TISSUE=Thymus;
CC -!- FUNCTION: Adapter protein implicated in the regulation of a large
CC spectrum of both general and specialized signaling pathways
GN Name=YWHAE;
RC TISSUE=Liver;
RC ... (13 Replies)
Discussion started by: raj_k
13 Replies
7. Shell Programming and Scripting
Team,
I am having requirement to convert rows to columns
Input is:
key ,count, id1, pulse1, id2, pulse2 ,id3, pulse3
12, 2 , 14 , 56 , 15, 65
13, 3, 12, 32, 14, 23, 18, 54
22, 1 , 32, 42
Expected Out put:
key, id,pulse
12, 14, 56
12, 15, 65
13 ,12, 32
13, 14 ,23
13, 18 ,54
22 ,32,... (3 Replies)
Discussion started by: syam1406
3 Replies
8. Shell Programming and Scripting
I am trying to match $1-$7 between the two files and if a match is found then the contents of $8 in file2 and copied over. The awk I tried is below. There is also a header row in file2 that has the Chr Start End Ref Alt that does not need to be searched. Thank you :).
awk
awk... (3 Replies)
Discussion started by: cmccabe
3 Replies
9. UNIX for Advanced & Expert Users
HI,
My Input file data is
dn:adcfgeneral
id:13343
Name:xxxxxx
Password:iutyerwuitywue wpuwt
tuiytruityrutyrwtyrwp
dn:cdferwjyyyy
id:3875
Name:yyyy
Password :hgfdsjkfhdsfkdlshf
dshfkldshfdklsfh
interset:uiuiufj
My output should be
... (6 Replies)
Discussion started by: dineshaila
6 Replies
10. UNIX for Beginners Questions & Answers
I have this code below that only prints out certain columns from the first two rows (doesn't affect rows 3 and beyond). How can I do the same on a partial header pattern “G_TP” instead of having to know specific column numbers (e.g. 374-479)? I've tried many other commands within this pipe with no... (4 Replies)
Discussion started by: aachave1
4 Replies
pfscut(1) General Commands Manual pfscut(1)
NAME
pfscut - Extract a rectangle out of a frame in PFS stream
SYNOPSIS
pfscut [--left <columns>] [--right <columns>] [--top <rows>] [--bottom <rows>] [--width <new_width>] [--height <new_height>] [--help] [x_ul
y_ul x_br y_br]
DESCRIPTION
Extract a rectangle out of each frame in PFS stream. You can either specify x and y coordinates of upper left and lower right corner (the
coordinates start with 0 and rise in the left-to-right and up-to-botton directions) or give a combination of the options listed below.
OPTIONS
--left <columns>, -l <columns>
Number of columns to be cut out from the left edge of an image.
--right <columns>, -r <columns>
Number of columns to be cut out from the right edge of an image.
--top <rows>, -t <rows>
Number of rows to be cut out from the top edge of an image.
--bottom <rows>, -b <rows>
Number of rows to be cut out from the bottom edge of an image.
--width <new_width>, -W <new_width>
Width of an output image. Note that --width can be mixed with either --left or --right option.
--height <new_height>, -H <new_height>
Height of an output image. Note that --height can be mixed with either --top or --bottom option.
--help, -h
Print a list of commandline options.
EXAMPLES
pfsin image.hdr | pfscut --left 20 --top 5 | pfsout out.hdr
Cut out 20 columns from the left and 5 rows from the top edge of image.hdr and save frame as out.hdr.
pfsin image.hdr | pfscut --left 20 --width 400 | pfsout out.hdr
Cut out 20 columns from the left edge of image.hdr, and create output image 400 pixels in width.
pfsin image.hdr | pfscut 0 0 511 511 | pfsout out.hdr
Cut left-upper part of the image of the size 512x512 (note that coordinates start with 0 and 512 is the last row/column that is
included in the resulting image).
SEE ALSO
pfsin(1) pfsout(1)
BUGS
Please report bugs and comments to Dorota Zdrojewska <dzdrojewska@wi.ps.pl>.
pfscut(1)