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Shell Programming and Scripting
Perl: Counting matches
Post 302632353 by hdefjunkie on Monday 30th of April 2012 12:19:37 AM
04-30-2012
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LEARN ABOUT DEBIAN
cmtk-asegment_sri24
asegment_sri24(1) The Computational Morphometry Toolkit asegment_sri24(1) NAME
asegment_sri24 - Segmentation using SRI24 atlas SYNOPSIS
asegment_sri24 TargetImage OutputImage DESCRIPTION
Register a target image to a selected channel of the SRI24 human brain atlas, then reformat one of the atlas label maps to the target image. Note: it is assume that the target image is skull-stripped, i.e., contains only the brain. OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --xml Write command line syntax specification in XML markup (for Slicer integration). --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --fast, -f Fast mode. --registration-channel The SRI24 channel used for registration to the target image. Supported values: "spgr", "early-fse", "late-fse", "fa", where the default is "spgr", or use one of the following: --spgr SPGR (T1-weighted) structural channel [This is the default] --early-fse Early-echo (PD-weighted) fast spin echo channel --late-fse Late-echo (T2-weighted) fast spin echo channel --fa Fractional anisotropy channel, derived from diffusion tensor images --label-map The SRI24 label map that is reformatted to the target image. Supported values: "tzo116plus", "lpba40", "tissue", where the default is "tzo116plus", or use one of the following: --tzo116plus Extended cortical parcellation template based on Tzourio-Mazoyer AAL 116 region template. [This is the default] --lpba40 Template based on the 40 subject LONI Probabilistic Brain Atlas segmentation. --tissue SRI24 maximum likelihood three compartment (GM, WM, CSF) tissue segmentation map. AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff LICENSE
http://www.fsf.org/licensing/licenses/gpl.html BUGS
Report bugs at http://nitrc.org/projects/cmtk/ ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 asegment_sri24(1)