Help making simple perl or bash script to create a simple matrix
Hello all!
This is my first post and I'm very new to programming. I would like help creating a simple perl or bash script that I will be using in my work as a junior bioinformatician.
Essentially, I would like to take a tab-delimted or .csv text with 3 columns and write them to a "3D" matrix:
Can anyone direct me to a resource that explains scripting in simple terms?
I have visited many sites and browsed this forum and have yet to find simple explanations. (8 Replies)
Hi
I want to write a small script that will create folders named from `AAAA' all the way to `ZZZZ'.
That is:
`AAAA'
`AAAB'
`AAAC'
...
`AABA'
`AABB'
`AABC'
...
`ABAA'
`ABAB'
`ABAC'
...
`ABBA'
...
`ZZZZ' (4 Replies)
I have a local account for a unix server. The idle timeout for the account is around 10 mins. I have to login to the server multiple times during the day. Is there a way to increase the idle timeout or may be a script that I can run on background so it is not idle. Something like echo date every 9... (3 Replies)
I'm attempting to parse a file whose contents follow this format;
4:/eula.1028.txt:
8:/eula.1031.txt:
19:/eula.1033.txt:
23:/eula.1036.txt:
27:/eula.1040.txt:
31:/eula.1041.txt:
35:/eula.1042.txt:
39:/eula.2052.txt:
43:/eula.3082.txt:
The number of lines of the file... (4 Replies)
Guys I want to do this:
copy:
/var/router/system1/config/backup/install.put
/var/router/system2/config/backup/install.put
/var/router/system3/config/backup/install.put
/var/router/system4/config/backup/install.put
into:
/var/router/system1/config/install.dat... (22 Replies)
Dear all,
I have a directory named A and some subdirectories named B, C, D with .xml files. I want to use the following command to strip the file.
sed -re ':start s/<*>//g; /</ {N; b start}' file.xml > file.xml
At the same time, I want to remove the blank lines using
sed '/^$/d'
How can... (6 Replies)
This is the problem: Write a script that will make a backup of a file giving it a ‘.bak’ extension & verify that it works. I have tried a number of different scripts that haven't worked and I haven't seen anything really concise and to the point via google. For brevity's sake this is one of the... (4 Replies)
Hello,
Anyone please covert this in perl language
########################
if ps faux | grep -v grep | grep ProcessXYZ
then
echo "$SERVICE is running, , everything is fine"
exit 0
else
echo "$SERVICE is not running"
exit 2
fi
Additional... (1 Reply)
I am trying to make a 4x4 matrix and I would greatly appreciate any help.
I have 4 text files and I want to do the following. I want to concatenate them and gzip them. Then I want to find the file size of the concatenated file and subtract the value of file A. Finally, I want to output this final... (1 Reply)
Discussion started by: sdw8253
1 Replies
LEARN ABOUT FREEBSD
atf-sh
ATF-SH(1) BSD General Commands Manual ATF-SH(1)NAME
atf-sh [-s shell] -- interpreter for shell-based test programs
SYNOPSIS
atf-sh script
DESCRIPTION
atf-sh is an interpreter that runs the test program given in script after loading the atf-sh(3) library.
atf-sh is not a real interpreter though: it is just a wrapper around the system-wide shell defined by ATF_SHELL. atf-sh executes the inter-
preter, loads the atf-sh(3) library and then runs the script. You must consider atf-sh to be a POSIX shell by default and thus should not
use any non-standard extensions.
The following options are available:
-s shell Specifies the shell to use instead of the value provided by ATF_SHELL.
ENVIRONMENT
ATF_LIBEXECDIR Overrides the builtin directory where atf-sh is located. Should not be overridden other than for testing purposes.
ATF_PKGDATADIR Overrides the builtin directory where libatf-sh.subr is located. Should not be overridden other than for testing purposes.
ATF_SHELL Path to the system shell to be used in the generated scripts. Scripts must not rely on this variable being set to select a
specific interpreter.
EXAMPLES
Scripts using atf-sh(3) should start with:
#! /usr/bin/env atf-sh
Alternatively, if you want to explicitly choose a shell interpreter, you cannot rely on env(1) to find atf-sh. Instead, you have to hardcode
the path to atf-sh in the script and then use the -s option afterwards as a single parameter:
#! /path/to/bin/atf-sh -s/bin/bash
ENVIRONMENT
ATF_SHELL Path to the system shell to be used in the generated scripts.
SEE ALSO atf-sh(3)BSD September 27, 2014 BSD