Hi,
I am having nightmare issue-ing remote ssh command from a CGI perl script.
It just won't run on debug message: It says permission denied. Can I even do this? as the apache server running under DAEMON account probably can't execute it? Is this the case of what's going on?
Here is my... (3 Replies)
Hi all,
I am facing the following issue:
Host A should execute a remote command (say pwd) on host B2.
B2 is not directly reacheable but you have to connect from a to B1, then from B1 you can execute the command ssh user@B2 pwd.
B1 and B2 are directly connected:
A => B1 => B2
| ... (3 Replies)
Help please!!
I want to use ssh to execute a remote exe and while it's running I want to query for the process ID of the exe (2 different ssh commands)
1. sshpass -p "<passwd>" ssh -f -o UserKnownHostsFile=/dev/null -o StrictHostKeyChecking=no root@<ipaddress> nohup /tmp/mmds_asyn &
2.... (0 Replies)
Hi,
I need a script that will connect to a list of servers and first sudo to root and then run a couple of commands.
For security reasons, we can't setup ssh keys as root.
Manually I have to login to a server as user and then sudo to root.
It's not possible to use root@servername , because of... (8 Replies)
Hi,
The below command is not giving me the count , Can somebody help me in re-writing this pls .
Proc_Exist=`ssh -q -o "BatchMode=yes" -o "PasswordAuthentication=no" $OAUSER@${Primary_Node} ps -ef |
grep -v grep | grep "${ICM_Proc}" |wc -l `
Also the same problem with below... (13 Replies)
How should i make the following code working
#!/bin/bash
INPUTFILE="test.txt"
while read STRING; do
IP=`host -t A $STRING | awk '{print $NF}'`
HOSTNAME=`ssh -oPasswordAuthentication=no -oStrictHostKeyChecking=no $IP "hostname"`
echo $HOSTNAME > out.txt
done < $INPUTFILE
At this moment while... (3 Replies)
Hi,
My goal is to connect from unix server A to windows server B and call a bat file on windows.
I am able to succeed in remoting to windows and executing a command, the issue i am facing is the shell scrip is exiting without making sure of bat file success.
Can you please help me in... (4 Replies)
Hello i am having an issue with bash script and this is the code
now=$(cat hosts1.txt | awk '{print $2;}')
while read n ;do
ssh root@$now 'useradd test1; echo -e "test1\ntest1" | passwd test1 && echo "test1 ALL=(ALL:ALL) ALL" >> /etc/sudoers'
When i execute only part with cat, it... (8 Replies)
How to execute setDomainEnv.sh in wblogic via ssh on remote server in shell script
we execute setDomainEnv.sh manually as . ./setDomainEnv.sh from its location ie /opt/SP/users/domian/bin"
My approach is not working.
Please advise.
#!/bin/bash
set -x
base="/opt/SP/users/d1/bin"... (5 Replies)
Discussion started by: abhaydas
5 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)