I am stuck with by DNA clustering analysis. I thought this forum will be a great help with data manipulations. Please help me.
I have a table with 91 columns. First I want to trim the table to only having rows where the column values are single characters which are A,T,G,C or 0. So any row having column values such as AA,AAG, AATG , Y, K etc has to be filtered out.
I figured out the regular expression will be something like [0ATGC]
Next I want to compare all the columns pairwise and group the columns which have the exact same values.The intermediate table output is not required.
Hey,
I have two files that have exactly the same format. They are both tab-delimited and contain 12 columns. However the # of rows vary. What I want to do is match columns # 5,6 and 7 between the two files. If they do match exactly (based on numbers) then I want the whole row from file 2 to... (1 Reply)
Hi to all,
I have two separated files:
FILE1
"V1" "V2" "V3"
Mary James Nicole
Robert Francisco Sophie
Nancy Antony Matt
Josephine Louise Rose
Mark Simon
Charles
FILE2
"V1" "V2" "V3"... (2 Replies)
Hello experts,
I have this problem, I need to match values based on two files, this is what I have:
file1
1.1
1.2
1.3
5.5
1.4
1.5
1.6
file2
1 a
2 B
3 C
4 D
5 z (7 Replies)
Hi,
I need to join two files together with one common value in a column. I think I can use awk or join or a combination but I can't quite get it.
Basically my data looks like this, with the TICKER columns matching up in each file
File1
TICKER,column 1, column, 2, column, 3, column 4
... (6 Replies)
Hello All,
I want to make a file which will have primarily lines of file2 but when first 2 fields matches with the file1 it should have those lines of file1..
example is as below..
file1
a;b;1
c;d
f;e
t;r;5
file2
b;g
a;b
c;d
v;b
f;e
t;r (2 Replies)
I am using awk to match columns and output based on those matches. For some reason it is not printing matching columns, am I missing something?
Operating system - windows with cygwin.
Command that I am using:
sed 's/]*,]*/,/g' $tempdir/file1 > $tempdir/file1.$$ && awk -F, 'FNR==NR{f2=$2... (7 Replies)
Hi,
i have 2 files , the data i need to match is in masterfile and i need to pull out column 3 from master if column 1 and 2 match and output entire row to new file
I have tried with join and awk and i keep getting blank outputs or same file
is there an easier way than what i am... (4 Replies)
Discussion started by: axis88
4 Replies
LEARN ABOUT CENTOS
tabfunc
TABFUNC(1) General Commands Manual TABFUNC(1)NAME
tabfunc - convert table to functions for rcalc, etc.
SYNOPSIS
tabfunc [ -i ] func1 [func2 ..]
DESCRIPTION
Tabfunc reads a table of numbers from the standard input and converts it to an expression suitable for icalc(1), rcalc(1) and their
cousins. The input must consist of a M x N matrix of real numbers, with exactly one row per line. The number of columns must always be
the same in each line, separated by whitespace and/or commas, with no missing values. The first column is always the independent variable,
whose value indexes all of the other elements. This value does not need to be evenly spaced, but it must be either monotonically increas-
ing or monotonically decreasing. (I.e. it cannot go up and then down, or down and then up.) Maximum input line width is 4096 characters
and the maximum number of data rows is 1024. Input lines not beginning with a numerical value will be silently ignored.
The command-line arguments given to tabfunc are the names to be assigned to each column. Tabfunc then produces a single function for each
column given. If there are some columns which should be skipped, the dummy name "0" may be given instead of a valid identifier. (It is
not necessary to specify a dummy name for extra columns at the end of the matrix.)
The -i option causes tabfunc to produce a description that will interpolate values in between those given for the independent variable on
the input.
EXAMPLE
To convert a small data table and feed it to rcalc for some calculation:
rcalc -e `tabfunc f1 f2 < table.dat` -f com.cal
AUTHOR
Greg Ward
SEE ALSO cnt(1), icalc(1), neaten(1), rcalc(1), rlam(1), total(1)RADIANCE 10/8/97 TABFUNC(1)