How to take out multiple matches in file2 using file1 as a reference?
Hi guys,
As the title, I want to take out the lines in file2 if the TCONS_* matches that in file1. Then put the lines in a file3. The TCONS numbers ranges from TCONS_00000024 to TCONS_00381684. Those numbers are continuous in file2, not in file1. Below is just some lines of file1 and file2
File1:
File2:
Thanks very much!
Last edited by joeyg; 03-14-2012 at 03:48 PM..
Reason: Please use CodeTags for sample files and scripts
Hi, i've two files (file1, file2) i want to take value (in column1) and search in file2 if the they match print the value from file2.
this is what i have so far.
awk 'FILENAME=="file1"{ arr=$1 }
FILENAME=="file2"
{print $0}
' file1 file2 (2 Replies)
Hello,
I have two files that I need to compare and print out the line from file2 that has the first 6 fields matching the first 6 fields in file1. Complicating this are the following restrictions
1. file1 is only a few thousand lines at most and file2 is greater than 2 million
2. I need to... (7 Replies)
Hello, I am new to shell scripting and i need to create a script with the following directions and I can not figure it out.
Create a shell script called newest.bash that takes two filenames as input arguments ($1 and $2) and prints out the name of the newest file (i.e. the file with the... (1 Reply)
Hi
I started to learn bash a week ago. I need filter the strings from the last column of a "file2" that match with a column from an other "file1"
file1:
chr10100036394-100038350AK077761
chr10100041065-100046547AK032226
chr10100041065-100046547AK016270
chr10100041065-100046547AK078231
...... (6 Replies)
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
Hi guys!
I'm trying to write something to find each line of file1 into file2, if line is found return YES, if not found return NO. The result can be written to a new file.
Can you please help me out?
FILE1 INPUT:
WATER
CAR
SNAKE
(in reality this file has about 600 lines each with a... (2 Replies)
HI,
I would like a little help on writing a if statement.
What i have so far is:
#!/bin/bash
FILE1=path/to/file1
FILE2=path/to/file2
echo ${FILE1} ${FILE2}
if ]
then
echo file1 and file2 not found
else
echo FILE ok
fi (6 Replies)
Good day,
I have a list of regular expressions in file1. For each match in file2, print the containing line and the line after.
file1:
file2:
Output:
I can match a regex and print the line and line after
awk '{lines = $0} /Macrosiphum_rosae/ {print lines ; print lines } '
... (1 Reply)
I want to print only the lines in file2 that match file1, in the same order as they appear in file 1
file1
file2
desired output:
I'm getting the lines to match
awk 'FNR==NR {a++}; FNR!=NR && a' file1 file2
but they are in sorted order, which is not what I want:
Can anyone... (4 Replies)
I am trying to use awk to find all the $2 values in file2 which is ~30MB and tab-delimited, that are between $2 and $3 in file1 which is ~2GB and tab-delimited.
I have just found out that I need to use $1 and $2 and $3 from file1 and $1 and $2of file2 must match $1 of file1 and be in the range... (6 Replies)
Discussion started by: cmccabe
6 Replies
LEARN ABOUT HPUX
diff3
diff3(1) General Commands Manual diff3(1)NAME
diff3 - 3-way differential file comparison
SYNOPSIS
file1 file2 file3
DESCRIPTION
compares three versions of a file, and prints disagreeing ranges of text flagged with these codes:
all three files differ
file1 is different
file2 is different
file3 is different
The type of change required to convert a given range of a given file to some other is indicated in one of these ways:
Text is to be appended after line number
n1 in file f, where f = or
Text is to be changed in the range line
n1 through line n2. If n1 = n2, the range can be abbreviated to n1.
The original contents of the range follows immediately after a indication. When the contents of two files are identical, the contents of
the lower-numbered file is suppressed.
Produces a script for the
editor that can be used to incorporate into file1 all changes between file2 and file3 (see ed(1)); i.e., the changes that
normally would be flagged and
Produces a script to incorporate only changes flagged
Produces a script to incorporate only changes flagged
Produces a script that will incorporate all
changes between file2 and file3, but treat overlapping changes (that is, changes that would be flagged with in normal
listing) differently. The overlapping lines in both files will be inserted by the edit script bracketed by and lines.
Produces a script that will incorporate only changes flagged
, but treat these changes in the manner of option.
The following command applies the resulting script to file1.
EXTERNAL INFLUENCES
International Code Set Support
Single- and multi-byte character code sets are supported.
WARNINGS
Text lines that consist of a single period defeat
Files longer than 64K bytes do not work.
FILES SEE ALSO diff(1).
diff3(1)