Hi--
I'm trying to figure out how to use cat more wisely. I have the following command, which works, but I'd like to understand how to get it to work more clearly and efficiently.
cat 'my file.001' 'my file.002' 'my file.003' 'my file.004' 'my file.005' 'my file.006' 'my file.007' 'my... (6 Replies)
Hi all,
I have a directory with many subdirectories each named like so: KOG0001, KOG0002, ...KOG9999.
Each of these subdirectories contain a variable number two kinds of files (nuc and prot) named like so: Capitella_sp_nuc_hits.fasta (nuc) and Capitella_sp_prot_hits.fasta (prot). The... (2 Replies)
Hopefully the title summarized what I need help with. I have multiple files that I would like to concatenate in bash.
ie:
cat file1 file2 file3 > bigfile
except I do not want to include the first line from each file (). Any help? Thanks. (6 Replies)
Hi all,
please help me construct the command. i want to loop through all files named bam* and bed*. My awk works for a particular pair but there are too many pairs to do manually.
I have generated multiple files in a folder in a given pattern. The files are named like
bam_fixed1.bam... (2 Replies)
Hi all,
Please guide. It has to do with parsing the input file names.
I have a fairly large number of files, I want to do some operations on them in a pairwise fashion (every file has a pair).
The names are in the following pattern, with the pairs of files named with _1 and _2 , the... (4 Replies)
I have a folder that contains a number of files with file names as follows:
XX.YYYY..ZZZ.2014.001.000000
XX.YYYY..ZZZ.2014.001.000400
XX.YYYY..ZZZ.2014.001.000800
XX.YYYY..ZZZ.2014.001.001200
XX.YYYY..ZZZ.2014.001.001600
.....
XX.YYYY..ZZZ.2014.002.000000
XX.YYYY..ZZZ.2014.002.000400... (8 Replies)
Hi,
Is there any way to do a cat * where it shows the name of each file in the process? Similar to what more does below?
$ more ?.sql
::::::::::::::
1.sql
::::::::::::::
set linesize 200
select db_unique_name,
cast(
from_tz(
cast(... (5 Replies)
Hi,
I would like to batch concatenate files by pairs. I have quite a few of them so I would not like to do that pair by pair separately.
the names of the file is of the type:
file1.fastq
newfile1_new.fastq
file2.fastq
newfile2_new.fastq
and so on...
I would like to concatenate file1... (2 Replies)
I will like to merge several files using 'cat', but I observe the output is not consistent. the merge begins at the last line of the first file.
file1.txt:
1234
1234
1234
file2.txt:
aaaa
bbbb
cccc
dddd
cat file1.txt file2.txt > file3.txt
file3.txt:
1234
1234
1234aaaa
bbbb
cccc... (13 Replies)
Discussion started by: geomarine
13 Replies
LEARN ABOUT DEBIAN
flow-cat
flow-cat(1) General Commands Manual flow-cat(1)NAME
flow-cat -- Concatenate flow files
SYNOPSIS
flow-cat [-aghmp] [-b big|little] [-C comment] [-d debug_level] [-o filename] [-t start_time] [-T start_time] [-z z_level]
[file|directory ...]
DESCRIPTION
The flow-cat utility processes files and/or directories of files in the flow-tools format. The resulting concatenated data set is written
to the standard output or file specified by -o. If file is a single dash (`-') or absent, flow-cat will read from the standard input.
OPTIONS -a Do not ignore filenames that begin with tmp.
-b big|little
Byte order of output.
-C Comment
Add a comment.
-d debug_level
Enable debugging.
-g Sort file list by capture start time before processing.
-h Display help.
-m Disable the use of mmap().
-p Preload headers. Use to preserve meta information such as lost flows.
-o file Write to file instead of the standard out.
-t start_time
Select flow files up to start_time. If used with -T select files between start_time and end_time.
-T end_time
Select flow files after end_time. If used with -t select files between start_time and end_time.
-z z_level
Configure compression level to z_level. 0 is disabled (no compression), 9 is highest compression.
file|directory...
Process the files and/or directory.
TIME /DATE parsing
start_time and end_time parsing is implemented with getdate.y, a commonly used function to process free-form time date specifications.
Example usage borrowed from cvs:
1 month ago
2 hours ago
400000 seconds ago
last year
last Monday
yesterday
a fortnight ago
3/31/92 10:00:07 PST
January 23, 1987 10:05pm
22:00 GMT
EXAMPLES
Concatenate all flow files begining with ft-v05.2001-05.01, use flow-print to display the results.
flow-cat ft-v05.2001-05-01.* | flow-print
Concatenate flow files in /flows/krc4, store store the output in compressed.flows at compression level 9 (best). The headers are preloaded
so various metadata such as the flow count is correct in the result. Filenames begining with tmp which are typically in-progress flow
files from flow-capture are not processed.
flow-cat -p -z9 /flows/krc4 > compressed.flows
BUGS
None known.
AUTHOR
Mark Fullmer maf@splintered.net
SEE ALSO flow-tools(1)flow-cat(1)