Sponsored Content
Top Forums Shell Programming and Scripting Match on first and last columns and merge Post 302597593 by jacobs.smith on Friday 10th of February 2012 05:03:44 PM
Old 02-10-2012
AWK-Match on first and last columns and merge

Hi Friends,

I have an input file of this kind

input.txt

Quote:
chr1 1 2 abc
chr1 3 4 abc
chr1 4 7 abc
chr1 2 4 abc
chr1 5 6 abc
chr2 10 19 abc
chr2 2 4 abc
chr2 3 6 abc
chr2 4 5 abc
chr2 1 3 def
chr2 5 11 def
chr2 7 9 def
chr3 11 13 hji
chr3 1 21 hji
output.txt

Quote:
chr1 1 7 abc
chr2 2 19 abc
chr2 1 11 def
chr3 1 21 hji
The logic is as follows, read a row, compare column1 to the next, if there is a match, compare column4. If these two match, grab the minimum of column2 and maximum of column3 and print the output with column1, min(col2), max(col3), column4.

Please note that my files are not sorted.

Thanks in advance.

Last edited by jacobs.smith; 02-10-2012 at 07:19 PM.. Reason: Output change
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Merge columns

Hi all - I have a file like below: A: A1,A2,A3,A4 B: 1,2,3,4 C: z,y,x,w .... This format repeats The output should come in a single line merging the first line field with the other two rows: A1_1 A1_z A2_2 A2_y A3_3 A3_x A4_4 A4_w Could anyone help with some directions ... (4 Replies)
Discussion started by: deepakgang
4 Replies

2. Shell Programming and Scripting

AWK to match and merge data from 2 files into 1.

Hello, hopefully this is an easy on for the AWK guru's out there. I'm having some trouble figuring out how to match+merge data in 2 files into 1 single report. I've got my 2 files filtered and delimited, just need to MATCH $3 in file1 to $1 in file2, then put $0 from File1 and $2+$3 from File2... (6 Replies)
Discussion started by: right_coaster
6 Replies

3. Shell Programming and Scripting

Match on columns and replace other columns

Hi Friends, I have the following input file cat input chr1 100 200 0.1 0.2 na 1 na nd chr1 105 200 0.1 0.2 1 1 na 98 chr1 110 290 nf 1 na nd na 1 chr2 130 150 12 3 na 1 na 1 chr3 450 600 nf nf na 10 na nd chr4 300 330 1 1 10 11 23 34 My requirement is 1. If $6 is na make $7 nd and... (2 Replies)
Discussion started by: jacobs.smith
2 Replies

4. Shell Programming and Scripting

Evaluate 2 columns, add sum IF two columns match on two rows

Hi all, I know this sounds suspiciously like a homework course; but, it is not. My goal is to take a file, and match my "ID" column to the "Date" column, if those conditions are true, add the total number of minutes worked and place it in this file, while not printing the original rows that I... (6 Replies)
Discussion started by: mtucker6784
6 Replies

5. Shell Programming and Scripting

awk match and merge with 2 files

Dear Awk experts! I have been trying to get a one liner for a match and merge operation, but having difficulties as I'm an awk newb. I always get stuck on the match and merge with 2 files. I have 2 files as follows: File 1: field 1,field 2,field 3,field 4,field 5,field 6,field 7,field... (6 Replies)
Discussion started by: landossa
6 Replies

6. Shell Programming and Scripting

Request: How to Parse dynamic SQL query to pad extra columns to match the fixed number of columns

Hello All, I have a requirement in which i will be given a sql query as input in a file with dynamic number of columns. For example some times i will get 5 columns, some times 8 columns etc up to 20 columns. So my requirement is to generate a output query which will have 20 columns all the... (7 Replies)
Discussion started by: vikas_trl
7 Replies

7. UNIX for Dummies Questions & Answers

Merge rows into one if first 2 columns match

Hi, I wanted to merge the content and below is input and required output info. Input: /hello,a,r /hello,a,L /hello,a,X /hi,b,v /hi,b,c O/p: /hello,a,r:L:X /hi,v,:v:c Use code tags, thanks. (6 Replies)
Discussion started by: ankitas
6 Replies

8. Shell Programming and Scripting

Merge lines based on match

I am trying to merge two lines to one based on some matching condition. The file is as follows: Matches filter: 'request ', timestamp, <HTTPFlow request=<GET: Matches filter: 'request ', timestamp, <HTTPFlow request=<GET: Matches filter: 'request ', timestamp, <HTTPFlow ... (8 Replies)
Discussion started by: jamie_123
8 Replies

9. UNIX for Beginners Questions & Answers

Match and Merge two file

Hi All, I have two file . I need to merge both file based on a match. File 1: Column1 column2 column3 column4 File 2: column3 column5 I need to combine the two file based on match , Which in my case is column3 and combine the file as below Combined file Column1 (10 Replies)
Discussion started by: arunkumar_mca
10 Replies

10. UNIX for Beginners Questions & Answers

Data match 2 files based on first 2 columns matching only and join if match

Hi, i have 2 files , the data i need to match is in masterfile and i need to pull out column 3 from master if column 1 and 2 match and output entire row to new file I have tried with join and awk and i keep getting blank outputs or same file is there an easier way than what i am... (4 Replies)
Discussion started by: axis88
4 Replies
subst(n)						       Tcl Built-In Commands							  subst(n)

__________________________________________________________________________________________________________________________________________________

NAME
subst - Perform backslash, command, and variable substitutions SYNOPSIS
subst ?-nobackslashes? ?-nocommands? ?-novariables? string _________________________________________________________________ DESCRIPTION
This command performs variable substitutions, command substitutions, and backslash substitutions on its string argument and returns the fully-substituted result. The substitutions are performed in exactly the same way as for Tcl commands. As a result, the string argument is actually substituted twice, once by the Tcl parser in the usual fashion for Tcl commands, and again by the subst command. If any of the -nobackslashes, -nocommands, or -novariables are specified, then the corresponding substitutions are not performed. For example, if -nocommands is specified, command substitution is not performed: open and close brackets are treated as ordinary characters with no special interpretation. Note that the substitution of one kind can include substitution of other kinds. For example, even when the -novariables option is speci- fied, command substitution is performed without restriction. This means that any variable substitution necessary to complete the command substitution will still take place. Likewise, any command substitution necessary to complete a variable substitution will take place, even when -nocommands is specified. See the EXAMPLES below. If an error occurs during substitution, then subst will return that error. If a break exception occurs during command or variable substi- tution, the result of the whole substitution will be the string (as substituted) up to the start of the substitution that raised the excep- tion. If a continue exception occurs during the evaluation of a command or variable substitution, an empty string will be substituted for that entire command or variable substitution (as long as it is well-formed Tcl.) If a return exception occurs, or any other return code is returned during command or variable substitution, then the returned value is substituted for that substitution. See the EXAMPLES below. In this way, all exceptional return codes are "caught" by subst. The subst command itself will either return an error, or will complete successfully. EXAMPLES
When it performs its substitutions, subst does not give any special treatment to double quotes or curly braces (except within command sub- stitutions) so the script set a 44 subst {xyz {$a}} returns "xyz {44}", not "xyz {$a}" and the script set a "p} q {r" subst {xyz {$a}} returns "xyz {p} q {r}", not "xyz {p} q {r}". When command substitution is performed, it includes any variable substitution necessary to evaluate the script. set a 44 subst -novariables {$a [format $a]} returns "$a 44", not "$a $a". Similarly, when variable substitution is performed, it includes any command substitution necessary to retrieve the value of the variable. proc b {} {return c} array set a {c c [b] tricky} subst -nocommands {[b] $a([b])} returns "[b] c", not "[b] tricky". The continue and break exceptions allow command substitutions to prevent substitution of the rest of the command substitution and the rest of string respectively, giving script authors more options when processing text using subst. For example, the script subst {abc,[break],def} returns "abc,", not "abc,,def" and the script subst {abc,[continue;expr {1+2}],def} returns "abc,,def", not "abc,3,def". Other exceptional return codes substitute the returned value subst {abc,[return foo;expr {1+2}],def} returns "abc,foo,def", not "abc,3,def" and subst {abc,[return -code 10 foo;expr {1+2}],def} also returns "abc,foo,def", not "abc,3,def". SEE ALSO
Tcl(n), eval(n), break(n), continue(n) KEYWORDS
backslash substitution, command substitution, variable substitution Tcl 7.4 subst(n)
All times are GMT -4. The time now is 08:16 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy