Sponsored Content
Top Forums Shell Programming and Scripting matching strings from different files Post 302587325 by verse123 on Wednesday 4th of January 2012 02:43:16 PM
Old 01-04-2012
hi guys,

I am writing

Code:
while read A B; do echo $A f1; done < f2 > f3

but it is only printing the actual name of the "f1" in f3. so it ends up looking like

Code:
DOG_01 f2
DOG_02 f2
DOG_03 f2
DOG_01 f2

instead of actually printing out what that row should look like in f2. I am using bash shell if that matters?

---------- Post updated at 02:43 PM ---------- Previous update was at 02:40 PM ----------

Oops. I just realized you were greping not echoing. Thanks for your help!
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

matching characters between strings

please send the logic or program to find the matching characters between two strings for ex string1 :abc string2 :adc no .of matching characters is 2(a,c) (9 Replies)
Discussion started by: akmtcs
9 Replies

2. Shell Programming and Scripting

Strings not matching

Hi, I have got two variables holding strings, if i echo them, they print the same value but if i compare the condition fails?? can somebody suggest something?? I have checked the word count too, they are also same. Thanks, Atul (4 Replies)
Discussion started by: atulmt
4 Replies

3. Programming

help with matching strings

In C programming how do i check if a char is equal to a vowel , like a e i o or u, small or big case. in my function i have the parameter like *word, and i am using word in a for loop, to check if its equal. i use tolower(word)=='a' || ..... but for some reason it only matches on lower case and... (1 Reply)
Discussion started by: omega666
1 Replies

4. UNIX for Dummies Questions & Answers

Help with finding matching position on strings

I have a DNA file like below and I am able to write a short program which finds/not an input motif, but I dont understand how I can include in the code to report which position the motif was found. Example I want to find the first or all "GAT" motifs and want the program to report which position... (12 Replies)
Discussion started by: pawannoel
12 Replies

5. Shell Programming and Scripting

Picking matching strings

I have a list of file names. However in some instances I might have a "-" at the beginning of the filename or an "=". For example I might have something like this set Lst = "file1 file2 file3 -file4 file5=" I want to pick up the ones having "-" at the beginning or "=" and store them in... (22 Replies)
Discussion started by: kristinu
22 Replies

6. Shell Programming and Scripting

Concatenating 2 lines from 2 files having matching strings

Hello All Unix Users, I am still new to Unix, however I am eager to learn it.. I have 2 files, some lines have some matching substrings, I would like to concatenate these lines into one lines, leaving other untouched. Here below is an example for that.. File 1 (fasta file): >292183... (6 Replies)
Discussion started by: Mohamed EL Hadi
6 Replies

7. Shell Programming and Scripting

Need to append matching strings in a file

Hi , I am writing a shell script to check pvsizes in linux box. # for i in `cat vgs1` > do > echo "########### $i ###########" > pvs|grep -i $i|awk '{print $2,$1,$5}'>pvs_$i > pvs|grep -i $i|awk '{print $1}'|while read a > do > fdisk -l $a|head -2|tail -1|awk '{print $2,$3}'>pvs_$i1 >... (3 Replies)
Discussion started by: nanduri
3 Replies

8. Shell Programming and Scripting

Matching only the strings I provide - sed

Hello.. I am currently learning sed and have found myself in some trouble.. I wrote this command: sed -ne 's/*\(\{2\}*\{2\}*\{2\}*\).*\(\{2\}*\{2\}*\{2\}*\).*/\1\2/p' and some of the output i get is : ->stockholm->paris<-stockholmpi<-tokyo->paris<-stockholmpi... (8 Replies)
Discussion started by: jozo95
8 Replies

9. UNIX for Beginners Questions & Answers

(g)awk: Matching strings from one file in another file between two strings

Hello all, I can get close to what I am looking for but cannot seem to hit it exactly and was wondering if I could get your help. I have the following sample from textfile with many thousands of lines: File 1 PS001,001 HLK PS002,004 L<G PS004,002 XNN PS004,006 BVX PS004,006 ZBX=... (7 Replies)
Discussion started by: jvoot
7 Replies

10. UNIX for Beginners Questions & Answers

How to extract the partial matching strings among two files?

I have a two file as shown below, file:1 >Contig_152_415 (REVERSE SENSE) >Contig_152_420 (REVERSE SENSE) >Contig_152_472 (REVERSE SENSE) >Contig_152_484 (REVERSE SENSE) File:2 >Contig_152:49081-49929 ATCGAGCAGCGCCGCGTGCGGTGCACCCTTGTGCAGATCGGGAGTAACCACGCGCACGGC... (2 Replies)
Discussion started by: dineshkumarsrk
2 Replies
fstrcmp(1)						      General Commands Manual							fstrcmp(1)

NAME
fstrcmp - fuzzy comparison of strings SYNOPSIS
fstrcmp [ -p ] first-string second-string fstrcmp -w first-string second-string fstrcmp -a first-file second-file fstrcmp -s needle haystack... fstrcmp --version DESCRIPTION
The fstrcmp command is used to make fuzzy comparisons between strings. The "edit distance" between the strings is printed, with 0.0 mean- ing the strings are utterly un-alike, and 1.0 meaning the strings are identical. You may need to quote the string to insulate them from the shell. OPTIONS
The fstrcmp command understands the following options: -a --files-as-bytes This option is used to compare two files as arrays of bytes. See fmemcmp(3) for more information. -p --pair This option is used to compare two strings as arrays of bytes. This is the default. See fstrcmp(3) for more information. -s --select This option is used to select the closest needle from the provided haystack alternatives. The most similar (single) choice is printed. If none are particularly similar, nothing is printed. See fstrcmp(3) for more information. See below for example. -V --version This option may be used to print the version of the fstrcmp command, and then exit. -w --wide-pair This option is used to compare two multi-byte character strings. See fstrcoll(3) for more information. EXIT STATUS
The fstrcmp command exits with status 1 on any error. The fstrcmp command only exits with status 0 if there are no errors. EXAMPLE
The fstrcmp --select option may be used in a shell script to improve error messages. case "$action" in start) start ;; stop) stop ;; restart) stop start ;; *) echo "$0: action "$action" unknown" 1>&2 guess=`fstrcmp --select "$action" stop start restart` if [ "$guess" ] then echo "$0: did you mean "$guess" instead?" 1>&2 fi exit 1 ;; esac Thus, the error message frequently suggests the correct action in the face of simple finger problems on the command line. SEE ALSO
fstrcmp(3) fuzzy comparison of strings fstrcoll(3) fuzzy comparison of two multi-byte character strings fstrcmpi(3) fuzzy comparison of strings, integer variation COPYRIGHT
fstrcmp version 0.4 Copyright (C) 2009 Peter Miller Peter Miller <pmiller@opensource.org.au> The comparison code is derived from the fuzzy comparison functions in GNU Gettext 0.17. The GNU Gettext comparison functions were, in turn, derived from GNU Diff 2.7. Copyright (C) 1988-2009 Free Software Foundation fstrcmp(1)
All times are GMT -4. The time now is 11:41 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy