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Top Forums Shell Programming and Scripting Automating execution of commands inside a program Post 302586413 by balajesuri on Sunday 1st of January 2012 11:41:09 PM
Old 01-02-2012
Quote:
Originally Posted by deeptisjains
for i in 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
do
cp ../../../EditDistanceRandomParsimonator/RAxML_parsimonyTree.test4D20RI$i.0 intree
./dnapars
R <----- This doesn't execute
U
Y
R
cp outfile result$i
done
It won't work this way.

1. What is dnapars program? Is it another shell script?
2. Is so, why not modify dnapars to take in the 4 options (R U Y R) directly from command line as Positional Parameters?
 

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ppmtopgm(1)                                                   General Commands Manual                                                  ppmtopgm(1)

NAME
ppmtopgm - convert a portable pixmap into a portable graymap SYNOPSIS
ppmtopgm [ppmfile] DESCRIPTION
Reads a portable pixmap as input. Produces a portable graymap as output. The output is a "black and white" rendering of the original image, as in a black and white photograph. The quantization formula used is .299 r + .587 g + .114 b. Note that although there is a pgmtoppm program, it is not necessary for simple conversions from pgm to ppm , because any ppm program can read pgm (and pbm ) files automatically. pgmtoppm is for colorizing a pgm file. Also, see ppmtorgb3 for a different way of converting color to gray. And ppmdist generates a grayscale image from a color image, but in a way that makes it easy to differentiate the original colors, not necessarily a way that looks like a black and white photograph. QUOTE
Cold-hearted orb that rules the night Removes the colors from our sight Red is gray, and yellow white But we decide which is right And which is a quantization error. SEE ALSO
pgmtoppm(1),ppmtorgb3(1),rgb3toppm(1),ppmdist(1),ppm(5),pgm(5) AUTHOR
Copyright (C) 1989 by Jef Poskanzer. 10 April 2000 ppmtopgm(1)
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