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Top Forums Shell Programming and Scripting parse fasta file to tabular file Post 302584712 by yifangt on Saturday 24th of December 2011 06:22:17 PM
Old 12-24-2011
Thanks Kato!
Your second version is much better. Is it possible to remove the tabs within the sequence fields? i.e. merge the sequence to a single field instead of being separated with the tab. gsub the first "\n" with "\t", but gsub the second "\n" and after with nothing. One step from what I want.
Merry Christmas!!!

Last edited by yifangt; 12-24-2011 at 07:39 PM.. Reason: improve the algorithm
 

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XmTabListInsertTabs(library call)										 XmTabListInsertTabs(library call)

NAME
XmTabListInsertTabs -- A convenience function that inserts tabs into a tab list SYNOPSIS
#include <Xm/Xm.h> XmTabList XmTabListInsertTabs( XmTabList oldlist, XmTab *tabs, Cardinal tab_count, int position); DESCRIPTION
XmTabListInsertTabs creates a new tab list that includes the tabs in oldlist. This function copies specified tabs to the tab list at the given position. The first tab_count tabs of the tabs array are added to the tab list. If oldlist is NULL, XmTabListInsertTabs creates a new tab list containing only the tabs specified. oldlist Specifies the tab list to add the tabs to. The function deallocates oldlist after extracting the required information. tabs Specifies a pointer to the tabs to be added to the tab list. It is the caller's responsibility to free the tabs in tabs by using XmTabFree. tab_count Specifies the number of tabs in tabs. position Specifies the position of the first new tab in the tab list. A value of 0 (zero) makes the first new tab the first tab in the tab list, a value of 1 makes it the second tab, and so on. If position is greater than the number of tabs in oldlist, then the tabs will be inserted at the end. If position is negative, the count will be backwards from the end. A value of -1 makes the first new tab the last tab, and so on. RETURN
If tabs is NULL or tab_count is 0 (zero), this function returns oldlist. Otherwise, it returns a new tab list. The function allocates space to hold the returned tab list. The application is responsible for managing the allocated space. The application can recover the allocated space by calling XmTabListFree. RELATED
XmTabList(3) and XmTabListFree(3). XmTabListInsertTabs(library call)
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