So I have a directory with 82 genomes in it and I have to split them up, one by one, into genes. I tried using the split function, like
Code:
#!/usr/bin/perl
use strict;
use warnings;
my $data = 'location';
my @values = split('>', $data);
foreach my $val (@values) {
print "$val\n";
}
exit;
At first I was using it from my home directory and specifying the location, then I was using it in the directory, using just the file name. I keep returning errors though. Does anyone know how to fix it? And should I use files with the .faa extension or get rid of it and just use the file name?
Thanks
Last edited by radoulov; 12-14-2011 at 06:23 AM..
Reason: Code tags!
Hi there,
I need to split one huge file into separate files if the condition is fulfilled according to that the position between 97 and 98 matches with “IT” at the segment MAS. There is no delimiter file is fix-width with varous line length.
Could you please help me how I do split the file... (1 Reply)
Hello,
I am trying to do the following;
bzcat data.in.bz2 | split -l 1000000 -d
this work great, except that once the files have been split, they are not in the directory I want them to be in. So I then have to move them, at times this can get hairy.
Is there anyway to specify where the... (4 Replies)
Hi All,
I have a rather stange set of requirements that I'm hoping someone here could help me with. We receive a file that is actually a concatenation of 4 files (don't believe this would change, but ideally the solution would handle n files).
The super-file looks like:... (7 Replies)
I am trying to split into different files using awk:
cat files | gawk '$1 ~ /---/ || $1 ~ /^deleting$/ || $1 ~ /^sorting$/ || $1 ~ /==/ {print}'| gawk '$1 ~ /---/ || $1 ~ /^deleting$/ || $1 ~ /^sorting$/ || $1 ~ /==/ {print}' |gawk '//{x="F"++i;}{print > x;}'
What I am trying to do is make F*... (3 Replies)
Dear All,
I have two files but want to extract data from one based on another... can you please help me
file 1
David
Tom
Ellen
and file 2
David|0010|testnamez|resultsz
David|0004|testnamex|resultsx
Tom|0010|testnamez|resultsz
Tom|0004|testnamex|resultsx
Ellen|0010|testnamez|resultsz... (12 Replies)
Hi All,
I have more than half million lines of XML file , wanted to split in four files in a such a way that top 7 lines should be present in each file on top and bottom line of should be present in each file at bottom.
from the 8th line actual record starts and each record contains 15 lines... (14 Replies)
hdr=$(cut -c1 $path$file|head -1)#extract header”H”
trl=$(cut -c|path$file|tail -1)#extract trailer “T”
SplitFile=$(cut -c 50-250 $path 1$newfile |sed'$/ *$//' head -1')# to trim white space and extract table name
If; then # start loop if it is a header
While read I #read file
Do... (4 Replies)
Hi ,
I am having a scenario where I need to split the file based on two field values. The file is a fixed length file.
ex:
AA0998703000000000000190510095350019500010005101980301
K 0998703000000000000190510095351019500020005101480 ... (4 Replies)
Discussion started by: saj
4 Replies
LEARN ABOUT OSX
split
SPLIT(1) BSD General Commands Manual SPLIT(1)NAME
split -- split a file into pieces
SYNOPSIS
split [-a suffix_length] [-b byte_count[k|m]] [-l line_count] [-p pattern] [file [name]]
DESCRIPTION
The split utility reads the given file and breaks it up into files of 1000 lines each. If file is a single dash ('-') or absent, split reads
from the standard input.
The options are as follows:
-a suffix_length
Use suffix_length letters to form the suffix of the file name.
-b byte_count[k|m]
Create smaller files byte_count bytes in length. If ``k'' is appended to the number, the file is split into byte_count kilobyte
pieces. If ``m'' is appended to the number, the file is split into byte_count megabyte pieces.
-l line_count
Create smaller files n lines in length.
-p pattern
The file is split whenever an input line matches pattern, which is interpreted as an extended regular expression. The matching line
will be the first line of the next output file. This option is incompatible with the -b and -l options.
If additional arguments are specified, the first is used as the name of the input file which is to be split. If a second additional argument
is specified, it is used as a prefix for the names of the files into which the file is split. In this case, each file into which the file is
split is named by the prefix followed by a lexically ordered suffix using suffix_length characters in the range ``a-z''. If -a is not speci-
fied, two letters are used as the suffix.
If the name argument is not specified, the file is split into lexically ordered files named with the prefix ``x'' and with suffixes as above.
ENVIRONMENT
The LANG, LC_ALL, LC_CTYPE and LC_COLLATE environment variables affect the execution of split as described in environ(7).
EXIT STATUS
The split utility exits 0 on success, and >0 if an error occurs.
SEE ALSO csplit(1), re_format(7)STANDARDS
The split utility conforms to IEEE Std 1003.1-2001 (``POSIX.1'').
HISTORY
A split command appeared in Version 3 AT&T UNIX.
BUGS
The maximum line length for matching patterns is 65536.
BSD August 21, 2005 BSD
12-14-2011
Splitting a file in a directory!
