So I have a directory with 82 genomes in it and I have to split them up, one by one, into genes. I tried using the split function, like
Code:
#!/usr/bin/perl
use strict;
use warnings;
my $data = 'location';
my @values = split('>', $data);
foreach my $val (@values) {
print "$val\n";
}
exit;
At first I was using it from my home directory and specifying the location, then I was using it in the directory, using just the file name. I keep returning errors though. Does anyone know how to fix it? And should I use files with the .faa extension or get rid of it and just use the file name?
Thanks
Last edited by radoulov; 12-14-2011 at 06:23 AM..
Reason: Code tags!
Hi there,
I need to split one huge file into separate files if the condition is fulfilled according to that the position between 97 and 98 matches with “IT” at the segment MAS. There is no delimiter file is fix-width with varous line length.
Could you please help me how I do split the file... (1 Reply)
Hello,
I am trying to do the following;
bzcat data.in.bz2 | split -l 1000000 -d
this work great, except that once the files have been split, they are not in the directory I want them to be in. So I then have to move them, at times this can get hairy.
Is there anyway to specify where the... (4 Replies)
Hi All,
I have a rather stange set of requirements that I'm hoping someone here could help me with. We receive a file that is actually a concatenation of 4 files (don't believe this would change, but ideally the solution would handle n files).
The super-file looks like:... (7 Replies)
I am trying to split into different files using awk:
cat files | gawk '$1 ~ /---/ || $1 ~ /^deleting$/ || $1 ~ /^sorting$/ || $1 ~ /==/ {print}'| gawk '$1 ~ /---/ || $1 ~ /^deleting$/ || $1 ~ /^sorting$/ || $1 ~ /==/ {print}' |gawk '//{x="F"++i;}{print > x;}'
What I am trying to do is make F*... (3 Replies)
Dear All,
I have two files but want to extract data from one based on another... can you please help me
file 1
David
Tom
Ellen
and file 2
David|0010|testnamez|resultsz
David|0004|testnamex|resultsx
Tom|0010|testnamez|resultsz
Tom|0004|testnamex|resultsx
Ellen|0010|testnamez|resultsz... (12 Replies)
Hi All,
I have more than half million lines of XML file , wanted to split in four files in a such a way that top 7 lines should be present in each file on top and bottom line of should be present in each file at bottom.
from the 8th line actual record starts and each record contains 15 lines... (14 Replies)
hdr=$(cut -c1 $path$file|head -1)#extract header”H”
trl=$(cut -c|path$file|tail -1)#extract trailer “T”
SplitFile=$(cut -c 50-250 $path 1$newfile |sed'$/ *$//' head -1')# to trim white space and extract table name
If; then # start loop if it is a header
While read I #read file
Do... (4 Replies)
Hi ,
I am having a scenario where I need to split the file based on two field values. The file is a fixed length file.
ex:
AA0998703000000000000190510095350019500010005101980301
K 0998703000000000000190510095351019500020005101480 ... (4 Replies)
Discussion started by: saj
4 Replies
LEARN ABOUT LINUX
gnomevfs-mkdir
gnomevfs-mkdir(1) User Commands gnomevfs-mkdir(1)NAME
gnomevfs-mkdir - make a new directory at a VFS location
SYNOPSIS
gnomevfs-mkdir URI
DESCRIPTION
gnomevfs-mkdir makes a new directory at a URI location that supports the creation of new directories.
OPERANDS
The following operands are supported:
URI Specifies the location of the new directory in standard URI format.
EXAMPLES
Example 1: Making a New Directory in the Home Directory
example% gnomevfs-mkdir file:///home/user/newdir
ENVIRONMENT VARIABLES
See environ(5) for descriptions of the following environment variables: NLSPATH.
EXIT STATUS
The exit value 0 is returned regardless of success or failure.
FILES
The following files are used by this application:
/usr/bin/gnomevfs-mkdir Executable to make a new directory at a VFS location
ATTRIBUTES
See attributes(5) for descriptions of the following attributes:
+-----------------------------+-----------------------------+
| ATTRIBUTE TYPE | ATTRIBUTE VALUE |
+-----------------------------+-----------------------------+
|Availability |SUNWgnome-vfs |
+-----------------------------+-----------------------------+
|Interface stability |External |
+-----------------------------+-----------------------------+
SEE ALSO gnomevfs-cat(1), gnomevfs-copy(1), gnomevfs-info(1), gnomevfs-ls(1)NOTES
Written by Stephen Browne, Sun Microsystems Inc., 2004.
SunOS 5.10 6 Sep 2004 gnomevfs-mkdir(1)
12-14-2011
Splitting a file in a directory!
