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Top Forums UNIX for Dummies Questions & Answers Find & Replace command - Fasta file Post 302580353 by methyl on Thursday 8th of December 2011 08:21:14 AM
Old 12-08-2011
No doubt posssible in "awk" or "sed" or whatever.

Open logic Shell approach. Too slow for large files.

Code:
cat filename.txt | while read line
do
        echo "${line}"
        read line
        echo "${line}"|fold -w 1|while read char
        do
                if [ ! "${char}" = "C" ]
                then
                        char="-"
                fi
                echo "${char}\c"
        done
        echo ""
done

>Sequence1
------C------C--------
>Sequence2
--CC------C-----C-
>Sequence3
------C-----CC-----C---

 

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MSSQL_FIELD_SEEK(3)													       MSSQL_FIELD_SEEK(3)

mssql_field_seek - Seeks to the specified field offset

SYNOPSIS
bool mssql_field_seek (resource $result, int $field_offset) DESCRIPTION
Seeks to the specified field offset. If the next call to mssql_fetch_field(3) won't include a field offset, this field would be returned. PARAMETERS
o $result - The result resource that is being evaluated. This result comes from a call to mssql_query(3). o $field_offset - The field offset, starts at 0. RETURN VALUES
Returns TRUE on success or FALSE on failure. EXAMPLES
Example #1 Using mssql_field_seek(3) on the example for mssql_fetch_field(3) <?php // Connect to MSSQL and select the database mssql_connect('MANGOSQLEXPRESS', 'sa', 'phpfi'); mssql_select_db('php'); // Send a select query to MSSQL $query = mssql_query('SELECT * FROM [php].[dbo].[persons]'); // Construct table echo '<h3>Table structure for 'persons'</h3>'; echo '<table border="1">'; // Table header echo '<thead>'; echo '<tr>'; echo '<td>Field name</td>'; echo '<td>Data type</td>'; echo '<td>Max length</td>'; echo '</tr>'; echo '</thead>'; // Dump all fields echo '<tbody>'; for ($i = 0; $i < mssql_num_fields($query); ++$i) { // Fetch the field information, notice the // field_offset parameter is not set. See // the mssql_field_seek call below $field = mssql_fetch_field($query); // Print the row echo '<tr>'; echo '<td>' . $field->name . '</td>'; echo '<td>' . strtoupper($field->type) . '</td>'; echo '<td>' . $field->max_length . '</td>'; echo '</tr>'; // Move the internal seek pointer to the next // row in the result set mssql_field_seek($query, $i + 1); } echo '</tbody>'; echo '</table>'; // Free the query result mssql_free_result($query); ?> SEE ALSO
mssql_fetch_field(3). PHP Documentation Group MSSQL_FIELD_SEEK(3)
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