10-20-2011
Guys,
Thank you so very much!
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1. UNIX for Dummies Questions & Answers
Hi,
I have these out put field seperator changed to "|" in my awk command, but it didn't give me the result.
Can someone help me find out why?
=======================================
/bin/awk 'BEGIN { OFS="|" } { print $0 }' list.tmp.$$ > listtmp.$$
=======================================... (1 Reply)
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2. Shell Programming and Scripting
OFS is inbuild command in awk.
I have a file file.txt
abc : def : ghi
jkl : mno: pqr
stu : vwx :yzz
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abc def
jkl mno
stu vwx
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Hi All,
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I am trying to parse regular XML file where I have to reduce number of decimal points in some xml elements. I am using following AWK command to achive that :
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Hi Im trying to tidy up the output of a who command when it writes to a log, everything I've tried doesnt seem to work though, any help would be massively appreciated. Im using the awk command to set the OFS as tab.
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Hi, Could anyone tell me what Im doing wrong here any help will be much appreciated
#!/bin/bash
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awk -F " " /export/home/tjmoore/log100 'BEGIN {OFS="\t";} {print $1,$2,$3,$4,$5,
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Hello,
I have an issue with adding commas as delimiters in this scenario:
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8. Shell Programming and Scripting
file:
sasa|asasa|asasa|asas
erer|Erer|rere|ererer
Output needed :
sasa:asasa:asasa:asas
erer:Erer:rere:ererer
Im getting output, when i use the $1,$2.
awk -F'|' 'BEGIN{OFS=":";} {print $1,$2; }' file
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sasa:asasa
erer:Erer
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Why the following code printing duplicate records?
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LEARN ABOUT DEBIAN
ace::sequence::transcript
Ace::Sequence::Transcript(3pm) User Contributed Perl Documentation Ace::Sequence::Transcript(3pm)
NAME
Ace::Sequence::Transcript - Simple "Gene" Object
SYNOPSIS
# open database connection and get an Ace::Object sequence
use Ace::Sequence;
# get a megabase from the middle of chromosome I
$seq = Ace::Sequence->new(-name => 'CHROMOSOME_I,
-db => $db,
-offset => 3_000_000,
-length => 1_000_000);
# get all the transcripts
@genes = $seq->transcripts;
# get the exons from the first one
@exons = $genes[0]->exons;
# get the introns
@introns = $genes[0]->introns
# get the CDSs (NOT IMPLEMENTED YET!)
@cds = $genes[0]->cds;
DESCRIPTION
Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability
to retrieve the annotated introns and exons of the gene.
OBJECT CREATION
You will not ordinarily create an Ace::Sequence::Gene object directly. Instead, objects will be created in response to a transcripts()
call to an Ace::Sequence object.
OBJECT METHODS
Most methods are inherited from Ace::Sequence::Feature. The following methods are also supported:
exons()
@exons = $gene->exons;
Return a list of Ace::Sequence::Feature objects corresponding to annotated exons.
introns()
@introns = $gene->introns;
Return a list of Ace::Sequence::Feature objects corresponding to annotated introns.
cds()
@cds = $gene->cds;
Return a list of Ace::Sequence::Feature objects corresponding to coding sequence. THIS IS NOT YET IMPLEMENTED.
relative()
$relative = $gene->relative;
$gene->relative(1);
This turns on and off relative coordinates. By default, the exons and intron features will be returned in the coordinate system used
by the gene. If relative() is set to a true value, then coordinates will be expressed as relative to the start of the gene. The first
exon will (usually) be 1.
SEE ALSO
Ace, Ace::Object, Ace::Sequence,Ace::Sequence::Homol, Ace::Sequence::Feature, Ace::Sequence::FeatureList, GFF
AUTHOR
Lincoln Stein <lstein@cshl.org> with extensive help from Jean Thierry-Mieg <mieg@kaa.crbm.cnrs-mop.fr>
Copyright (c) 1999, Lincoln D. Stein
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 168:
You forgot a '=back' before '=head1'
perl v5.14.2 2001-05-22 Ace::Sequence::Transcript(3pm)