help! script to select line with greatest value 2 between columns
Hi,
I’m trying to do something I haven’t done before and I’m struggling with how to even create the command or script.
I have the following space delim file:
This is an example file
I want to modify the file so that I only get the gene with the greatest length written to one file.
So want to calculate the length of each form of the genes in each row then: where length = end value- begin value
I want to be able to create a file with only the genes with greatest length which would look like this:
Any help is really aprreciated, I have 30,000 genes with different forms like this!
Thanks!
Last edited by zxmaus; 10-21-2011 at 04:41 AM..
Reason: added code tags
Select and display sum depending upon even columns
i have a input as :
2898 | homy | pune | 7/4/09
1 :6298 | anna | chennai | 7/4/08
2 :3728 | gonna | kol | 8/2/10
3 :3987 | hogja | mumbai | 8/5/09
4 :6187 | galma | london | 9/5/01
5 :9167 | tamina | ny | 8/3/10
6 :3981 | dastan | bagh |... (1 Reply)
I have a huge matrix file which looks like this (example matrix):
1 2 3 5
4 5 6 7
7 6 8 9
1 2 4 2
7 6 5 1
3 2 1 9
As one can see, this matrix has 4 columns and 6 rows. But my original matrix has some 3 million rows and 6000 columns.
For example, on this matrix I can define my task as... (2 Replies)
I have a file with 20 columns. I'd like to retain only the lines for which the values in at least x columns, looking only at columns 6-20, are above a threshold.
For example, I'd like to retain only the lines in the file below that have at least 8 columns (again, looking only at columns 6-20)... (3 Replies)
Hi , I want to compare first 3 columns of File A and File B and create a new file File C which will have all rows from File B and will include rows that are present in File A and not in File B based on First 3 column comparison.
Thanks in advance for your help.
File A
A,B,C,45,46... (2 Replies)
Hi,
I can select all the even columns from a file like this:
awk '{ for (i=1;i<=NF;i+=2) $i="" }1' file > new file
How can I select the 1st and all the even columns using awk? Thanks! (1 Reply)
I want to select 2nd, 3rd columns if line has "key3" and print rest of the lines as is.
# This is my sample input
key1="val1" key2="val2" key3="val3" key4="val4"
some text some text
some text some text
key1="val1" key2="val2" key3="val3" key4="val4"
some text some text
some text some... (3 Replies)
I have a dateset like this:
Gly1 Gly2 2 1 0
Gly3 Gly4 3 4 5
Gly3 Gly5 1 3 2
Gly2 Gly1 3 6 2
Gly4 Gly3 2 2 1
Gly6 Gly4 4 2 1what I expected is:
Gly1 Gly2 2 1 0
Gly2 Gly1 3 6 2
Gly3 Gly4 3 4 5
Gly4 Gly3 2 2 1
A vs B, or B vs A are the same... (7 Replies)
Discussion started by: nengcheng
7 Replies
LEARN ABOUT DEBIAN
script-email
SCRIPT-EMAIL(8) System Administration Commands SCRIPT-EMAIL(8)NAME
script-email - Amanda script to send email notifications
DESCRIPTION
script-email is an Amanda script implementing the Script API. It should not be run by users directly. It sends a notification email to the
addresses specified in the MAILTO property.
PROPERTIES
This section lists the properties that control script-email's functionality. See amanda-scripts(7) for information on the Script API,
script configuration.
MAILTO
List of email addresses that will receive an email on command execution. It is a multi-valued property:
property "MAILTO" "amanda@domain.com" "sysadmin@domain.com" "amandauser@domain.com"
EXAMPLE
In this example, script-email is scheduled to be run before the DLE, on the server. The unqualified email address amanda will be passed to
the email system unchanged. The script is then attached to a dumptype, which can then be specified for any DLEs which require
notification.
define script-tool pre-email {
comment "email me before this DLE is backed up"
plugin "script-email"
execute-on pre-dle-backup
execute-where server
property "mailto" "amanda"
}
define dumptype user-tar-email {
user-tar
script "pre-email"
}
SEE ALSO amanda(8), amanda.conf(5), amanda-client.conf(5), amanda-scripts(7)
The Amanda Wiki: : http://wiki.zmanda.com/
AUTHORS
Jean-Louis Martineau <martineau@zmanda.com>
Zmanda, Inc. (http://www.zmanda.com)
Dustin J. Mitchell <dustin@zmanda.com>
Zmanda, Inc. (http://www.zmanda.com)
Amanda 3.3.1 02/21/2012 SCRIPT-EMAIL(8)