10-19-2011
7 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
I am attempting to submit alot of jobs to this CONDOR program, in which it utilizes alot of computers and puts a single job onto each. Anyways, im trying to use the same program (autodock) to analyze different input files (dpf files), where each input file has a different name but same file... (0 Replies)
Discussion started by: olifu02
0 Replies
2. UNIX for Dummies Questions & Answers
Dear all,
I'm a new guy doing some quntum calculation with gaussian on my rocks clusters. Recently, my cluster upgraded to rocks 5.3, but something strange happened. Everything goes correct except a serious problem. when I summit my gaussian job with script to sge queue, the job does run,... (0 Replies)
Discussion started by: liuzhencc
0 Replies
3. UNIX and Linux Applications
Hey all
Im looking to reduce the number of cpus available on a certain node in our cluster available for jobs using SGE.
i.e. we have one node that has 24 cpus available for jobs on SGE, i would like to reduce that to 16. Thanks (1 Reply)
Discussion started by: olifu02
1 Replies
4. UNIX for Dummies Questions & Answers
Hello Unix.com
I want to know how can I extract from a large email list only the users.
1@a.com
2@b.com
3@c.com
I want to extract only 1, 2, 3.
Thanks in advance.
Galford D. Weller (2 Replies)
Discussion started by: galford
2 Replies
5. UNIX for Beginners Questions & Answers
Hi,
I was trying to run a program that calls 8 processors (with max. RAM of 2 GB per processor). I want to run this program on my cluster that runs SGE. The cluster has 2 nodes, and each node has 62 cores, and 248GB/node. Currently, I use the scripts below, but the program (softx below) crashes... (0 Replies)
Discussion started by: pc2001
0 Replies
6. Shell Programming and Scripting
Hi,
I'm trying to edit my working bash script to an SGE script in order to submit it as a job to the cluster.
Currently I have:
#!/bin/bash
# Perform fastqc on files in a specified directory.
for ((j=1; j <=17; j++))
do
directory=/data4/una/batch"$j"/
... (0 Replies)
Discussion started by: una1992
0 Replies
7. Shell Programming and Scripting
Hello,
I'm working on a SGE cluster and trying to echo the variables passed to the qsub command.
My script is as follows
#!/bin/bash
#$ -V
#$ -cwd
#$ -pe make 10
if ; then
echo "Variable is not set"
else
echo "Variable says: $StatedUserName"
fi
and I run the... (1 Reply)
Discussion started by: nans
1 Replies
LEARN ABOUT FREEBSD
atf-sh
ATF-SH(1) BSD General Commands Manual ATF-SH(1)
NAME
atf-sh [-s shell] -- interpreter for shell-based test programs
SYNOPSIS
atf-sh script
DESCRIPTION
atf-sh is an interpreter that runs the test program given in script after loading the atf-sh(3) library.
atf-sh is not a real interpreter though: it is just a wrapper around the system-wide shell defined by ATF_SHELL. atf-sh executes the inter-
preter, loads the atf-sh(3) library and then runs the script. You must consider atf-sh to be a POSIX shell by default and thus should not
use any non-standard extensions.
The following options are available:
-s shell Specifies the shell to use instead of the value provided by ATF_SHELL.
ENVIRONMENT
ATF_LIBEXECDIR Overrides the builtin directory where atf-sh is located. Should not be overridden other than for testing purposes.
ATF_PKGDATADIR Overrides the builtin directory where libatf-sh.subr is located. Should not be overridden other than for testing purposes.
ATF_SHELL Path to the system shell to be used in the generated scripts. Scripts must not rely on this variable being set to select a
specific interpreter.
EXAMPLES
Scripts using atf-sh(3) should start with:
#! /usr/bin/env atf-sh
Alternatively, if you want to explicitly choose a shell interpreter, you cannot rely on env(1) to find atf-sh. Instead, you have to hardcode
the path to atf-sh in the script and then use the -s option afterwards as a single parameter:
#! /path/to/bin/atf-sh -s/bin/bash
ENVIRONMENT
ATF_SHELL Path to the system shell to be used in the generated scripts.
SEE ALSO
atf-sh(3)
BSD
September 27, 2014 BSD