Sponsored Content
Top Forums Shell Programming and Scripting Request for help with SGE submission script manipulation Post 302565910 by crunchgargoyle on Wednesday 19th of October 2011 05:37:22 AM
Old 10-19-2011
Many thanks!
 

7 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Help in job submission!

I am attempting to submit alot of jobs to this CONDOR program, in which it utilizes alot of computers and puts a single job onto each. Anyways, im trying to use the same program (autodock) to analyze different input files (dpf files), where each input file has a different name but same file... (0 Replies)
Discussion started by: olifu02
0 Replies

2. UNIX for Dummies Questions & Answers

g03 problems on rocks 5.3 with sge queue.

Dear all, I'm a new guy doing some quntum calculation with gaussian on my rocks clusters. Recently, my cluster upgraded to rocks 5.3, but something strange happened. Everything goes correct except a serious problem. when I summit my gaussian job with script to sge queue, the job does run,... (0 Replies)
Discussion started by: liuzhencc
0 Replies

3. UNIX and Linux Applications

Looking to reduce the number a cpus available for SGE

Hey all Im looking to reduce the number of cpus available on a certain node in our cluster available for jobs using SGE. i.e. we have one node that has 24 cpus available for jobs on SGE, i would like to reduce that to 16. Thanks (1 Reply)
Discussion started by: olifu02
1 Replies

4. UNIX for Dummies Questions & Answers

Text manipulation help request

Hello Unix.com I want to know how can I extract from a large email list only the users. 1@a.com 2@b.com 3@c.com I want to extract only 1, 2, 3. Thanks in advance. Galford D. Weller (2 Replies)
Discussion started by: galford
2 Replies

5. UNIX for Beginners Questions & Answers

Sun Grid Engine (SGE) scripts - processors?

Hi, I was trying to run a program that calls 8 processors (with max. RAM of 2 GB per processor). I want to run this program on my cluster that runs SGE. The cluster has 2 nodes, and each node has 62 cores, and 248GB/node. Currently, I use the scripts below, but the program (softx below) crashes... (0 Replies)
Discussion started by: pc2001
0 Replies

6. Shell Programming and Scripting

SGE submit script

Hi, I'm trying to edit my working bash script to an SGE script in order to submit it as a job to the cluster. Currently I have: #!/bin/bash # Perform fastqc on files in a specified directory. for ((j=1; j <=17; j++)) do directory=/data4/una/batch"$j"/ ... (0 Replies)
Discussion started by: una1992
0 Replies

7. Shell Programming and Scripting

Submit a qsub script SGE

Hello, I'm working on a SGE cluster and trying to echo the variables passed to the qsub command. My script is as follows #!/bin/bash #$ -V #$ -cwd #$ -pe make 10 if ; then echo "Variable is not set" else echo "Variable says: $StatedUserName" fi and I run the... (1 Reply)
Discussion started by: nans
1 Replies
ATF-SH(1)						    BSD General Commands Manual 						 ATF-SH(1)

NAME
atf-sh [-s shell] -- interpreter for shell-based test programs SYNOPSIS
atf-sh script DESCRIPTION
atf-sh is an interpreter that runs the test program given in script after loading the atf-sh(3) library. atf-sh is not a real interpreter though: it is just a wrapper around the system-wide shell defined by ATF_SHELL. atf-sh executes the inter- preter, loads the atf-sh(3) library and then runs the script. You must consider atf-sh to be a POSIX shell by default and thus should not use any non-standard extensions. The following options are available: -s shell Specifies the shell to use instead of the value provided by ATF_SHELL. ENVIRONMENT
ATF_LIBEXECDIR Overrides the builtin directory where atf-sh is located. Should not be overridden other than for testing purposes. ATF_PKGDATADIR Overrides the builtin directory where libatf-sh.subr is located. Should not be overridden other than for testing purposes. ATF_SHELL Path to the system shell to be used in the generated scripts. Scripts must not rely on this variable being set to select a specific interpreter. EXAMPLES
Scripts using atf-sh(3) should start with: #! /usr/bin/env atf-sh Alternatively, if you want to explicitly choose a shell interpreter, you cannot rely on env(1) to find atf-sh. Instead, you have to hardcode the path to atf-sh in the script and then use the -s option afterwards as a single parameter: #! /path/to/bin/atf-sh -s/bin/bash ENVIRONMENT
ATF_SHELL Path to the system shell to be used in the generated scripts. SEE ALSO
atf-sh(3) BSD
September 27, 2014 BSD
All times are GMT -4. The time now is 04:21 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy