hi everybody,
My name is Raj i work in GE Global Software Solutions As Siebel Analyst. Can any one help in writing the code in Ansi C on HP-Unix platform to get data from IBM MQ-Series Server. IBM MQ-series client will be installed on the client machine which is on WIN NT platform. And MQ-series... (2 Replies)
Hi,
I have a challenging task,in which i have to find the duplicate files by its name and size,then i need to take anyone of the file.Then i need to open the file and find for more than one pattern and count of that pattern.
Note:These are the samples of two files,but i can have more... (2 Replies)
Hi,
Any one please let me know, how to write in to MQ Series through C. I tried, but it was vein, am expecting material(URL) or code.
Thanks,
Naga:cool: (5 Replies)
HI I have a series(sorted), which i require to create combinations. I am not getting the good code for doing this. My series should generate the following combinations... Please help me in getting this in C++. Thanks for your help.
A:
A
A B:
A
B
A B
A B C:
A
... (1 Reply)
Hi All,
Do anyone know if I upgrade cpu module and memory module for one of the domain inside Sun M5000. After the upgrade, will the hostid for the domain change or it will remain as long we don't change the system board?
Currently will try to upgrade one of the Sun M5000 with 4 domains... (2 Replies)
After spending sometime playing around with my script I just cannot get it to do what I want. So I decided to ask. My file looks something like this:
I am using the following code to extract sequences that contain dashes
awk '/^>/{id=$0;next}{if (match($1,"-")) print id "\n" $0}' infile
... (17 Replies)
I have two LARGE files of data more than 20,000 line each, file-1 and file-2, and I wish to do the following if possible:
file-1
1 2 5 7 9
2 4 6 3 8 9
4 6 8 9 3 2 1 3
1 2
.
.
.
file-2
1 2 3
2 5 7
5 7 3
7 9 4
. (5 Replies)
Fairly straightforward, but I'm having an awful time getting what I thought was a simple regex to work. I'll give the command I was playing with, and I'm aware why this one doesn't work (the 1,3 is off the A-Z, not the whole expression), I just don't know what the fix is:
Actual Output(s):
$... (5 Replies)
Hai
what command is used to find red hat linux 5 series? (2 Replies)
Discussion started by: vinayd
2 Replies
LEARN ABOUT DEBIAN
bio::index::swisspfam
Bio::Index::SwissPfam(3pm) User Contributed Perl Documentation Bio::Index::SwissPfam(3pm)NAME
Bio::Index::SwissPfam - Interface for indexing swisspfam files
SYNOPSIS
use Bio::Index::SwissPfam;
use strict;
my $Index_File_Name = shift;
my $inx = Bio::Index::SwissPfam->new('-filename' => $Index_File_Name,
'-write_flag' => 'WRITE');
$inx->make_index(@ARGV);
use Bio::Index::SwissPfam;
use strict;
my $Index_File_Name = shift;
my $inx = Bio::Index::SwissPfam->new('-filename' => $Index_File_Name);
foreach my $id (@ARGV) {
my $seq = $inx->fetch($id); # Returns stream
while( <$seq> ) {
if(/^>/) {
print;
last;
}
}
}
DESCRIPTION
SwissPfam is one of the flat files released with Pfam. This modules provides a way of indexing this module.
Inherits functions for managing dbm files from Bio::Index::Abstract.pm, and provides the basic funtionallity for indexing SwissPfam files.
Only retrieves FileStreams at the moment. Once we have something better (ie, an object!), will use that. Heavily snaffled from Index::Fasta
system of James Gilbert. Note: for best results 'use strict'.
FEED_BACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/project/bioperl
AUTHOR - Ewan BirneyAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
_index_file
Title : _index_file
Usage : $index->_index_file( $file_name, $i )
Function: Specialist function to index swisspfam format files.
Is provided with a filename and an integer
by make_index in its SUPER class.
Example :
Returns :
Args :
fetch
Title : fetch
Usage : $index->fetch( $id )
Function: Returns a Bio::Seq object from the index
Example : $seq = $index->fetch( 'dJ67B12' )
Returns : Bio::Seq object
Args : ID
perl v5.14.2 2012-03-02 Bio::Index::SwissPfam(3pm)