You nearly had it! You didn't put a ; or newline before the 'do', though.
You don't need to put the filenames in a variable. That could actually be bad -- $FILES will split "file name.pdbgt file2.pdbgt" into "file", "name.pdbgt", "file2.pdbgt". "for FILE in *" won't.
You also don't need to put the ".pdbgt" back on the end, it never left
Code:
#!/bin/bash
for f in /home/afalk/Desktop/battest/*.pdbqt
do
vina --config /home/afalk/Desktop/A.txt --ligand "$f"
done
This code is in my 'case' statement and it all else works fine.
The problem I have is that the value in 'procno' is not passed on to the external program (fireit).
It is passing all zeros instead of the actual process number.
By the time I get to this case statement, I know the "Number" and... (1 Reply)
Hi,
I have a program in /opt/local/bin, my path in my .profile is
export PATH=/opt/local/bin:/opt/local/sbin:$PATH
however when i type the program name it cannot find it, however i know the program is in /opt/local/bin?
Thanks (2 Replies)
Hello
I am getting error when the file (Folder or Application) path having space is given as external input to the shell program.
It works fine for the files which has no spaces in the file name
Thans, (5 Replies)
Hello,
in the application i'm writing i need to launch "recordmydesktop" to capture the screen,but i'm having a problem: when the recording stops,and the encoding of the saved file starts,the entire system hangs until the completion of the encoding.This happens if i launch recordmydesktop from my... (7 Replies)
Hi,
in my program i need to run an external program in background.I am aware that there are at least 2 alternatives for this:
1)fork+exec
2)system("program &");
I have read several posts about this,and they all tend to suggest to use fork+exec (and that's what i am doing now).
I have some... (2 Replies)
Sorry for such a dreadful title, but I'm not sure how to be more descriptive. I'm hoping some of the more gurutastic out there can take a look at a solution I came up with to a problem, and advice if there are better ways to have gone about it.
To make a long story short around 20K pieces of... (2 Replies)
I have asked this before but I haven't had any luck so far getting this to work. I use RCS(revision control system). When it runs if I pass the value 'unlock' to $3 its reassigned to $unlock. When I run the command (rcs -u'version number' 'filename') ti will ask me 1-(Do you want to break the lock... (5 Replies)
Hi all,
I am using an external binary to view memory starting from a specific address and i want to automate this via PERL however there are problems. Hope you can help me ..thx
The output of the programme is like below:
bash-3.2$ mem_disp 12B21D20 100
Opening RO Data Memory File scp.ro... (4 Replies)
Hi,
I have created a Shell Script and invoke through java using Process Builder
It's working fine, if (Shell script file ) in the same directory as java file.
By Problem:
How to run the Shell Script file( resides in external directory) using java. What configuration i have... (1 Reply)
Dear community,
I communicate with an external program (maxima) using named pipes. If I use a text file to capture the output (maxima > out.txt) i can see the programs answer directly after the input written into the file. But if bypass the output into a named pipe (maxima > pipe) and capture it... (1 Reply)
Discussion started by: Pustekuchen
1 Replies
LEARN ABOUT HPUX
merge
merge(1) General Commands Manual merge(1)NAME
merge - three-way file merge
SYNOPSIS
file1 file2 file3
DESCRIPTION
combines two files that are revisions of a single original file. The original file is file2, and the revised files are file1 and file3.
identifies all changes that lead from file2 to file3 and from file2 to file1, then deposits the merged text into file1. If the option is
used, the result goes to standard output instead of file1.
An overlap occurs if both file1 and file3 have changes in the same place. prints how many overlaps occurred, and includes both alterna-
tives in the result. The alternatives are delimited as follows:
lines in file1
lines in file3
If there are overlaps, edit the result in file1 and delete one of the alternatives.
This command is particularly useful for revision control, especially if file1 and file3 are the ends of two branches that have file2 as a
common ancestor.
EXAMPLES
A typical use for is as follows:
1. To merge an RCS branch into the trunk, first check out the three different versions from RCS (see co(1)) and rename them for
their revision numbers: 5.2, 5.11, and 5.2.3.3. File 5.2.3.3 is the end of an RCS branch that split off the trunk at file 5.2.
2. For this example, assume file 5.11 is the latest version on the trunk, and is also a revision of the "original" file, 5.2.
Merge the branch into the trunk with the command:
3. File 5.11 now contains all changes made on the branch and the trunk, and has markings in the file to show all overlapping
changes.
4. Edit file 5.11 to correct the overlaps, then use the command to check the file back in (see ci(1)).
WARNINGS
uses the ed(1) system editor. Therefore, the file size limits of ed(1) apply to
AUTHOR
was developed by Walter F. Tichy.
SEE ALSO diff3(1), diff(1), rcsmerge(1), co(1).
merge(1)
09-21-2011
You didn't put a ; or newline before the 'do', though.