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Top Forums Shell Programming and Scripting Automate the process of running jobs on several directories consecutively Post 302556251 by lost.identity on Saturday 17th of September 2011 12:11:45 PM
Old 09-17-2011
Many thanks for the reply.

Sorry I wasn't very clear when I first explained it. Actually I need to to see if the command runs successfully in a particular directory before moving to the next directory (I need to copy data from the previous directory with a successful run to the current directory).

I don't know how I could do this without having a counter as the order in which I run the commands depends on the directory number (i.e. the number after "_ " in VF_*)

I need to figure out how this would work if the increment is not constant.

This is how it looks now (the word success appears several times in my file but it appears on the 9th line if the computation was finally successful, didn't know how to write this any neater).

Code:
#!/bin/bash

i=50
c=0
for dir in VF_*
do
        let c=$c+1
        if [ -d "$VF_$i" ]; then
                cd VF_$i
                pwd
                if [ $c -ne 1 ]
                        cp ../VF_$i_old/restrt.bin .      #copying the file from previous successful run
                     ./oppre_cT_T < inp01_$i > out.dat &
                else
                     ./oppre_cT_T < inp01_$i > out.dat &
                fi
        wait $!
        else
                echo Directory VF_$i does not exist.
        fi

        let i_old=$i
        let i=$i+50

        cmd=$(cat ../../phi_0_6_T/VF_100/out.dat | tail -9 | grep -ci "SUCCESS")

        if [ $cmd -ne 0 ]; then
                echo "Success"
        cd ../
        else
                echo "Unsuccessful"
                exit 1
        fi

done

exit

 

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lndir(1X)																 lndir(1X)

NAME
lndir - create a shadow directory of symbolic links to another directory tree SYNOPSIS
lndir fromdir [todir] DESCRIPTION
lndir makes a shadow copy todir of a directory tree fromdir, except that the shadow is not populated with real files but instead with sym- bolic links pointing at the real files in the fromdir directory tree. This is usually useful for maintaining source code for different machine architectures. You create a shadow directory containing links to the real source which you will have usually NFS mounted from a machine of a different architecture, and then recompile it. The object files will be in the shadow directory, while the source files in the shadow directory are just symlinks to the real files. This has the advantage that if you update the source, you need not propagate the change to the other architectures by hand, since all source in shadow directories are symlinks to the real thing: just cd to the shadow directory and recompile. The todir argument is optional and defaults to the current directory. The fromdir argument may be relative (e.g., ../src) and is relative to todir (not the current directory). Note that RCS, SCCS, and CVS.adm directories are not shadowed. Note also that if you add files, you must run lndir again. Deleting files is difficult because the symlinks will point to places that no longer exist. BUGS
The patch routine needs to be able to change the files. You should never run patch from a shadow directory. Use a command like the following to clear out all files before you can relink (if the fromdir has been moved, for instance): find todir -type l -print | xargs rm The following command will find all files that are not directories: find . ! -type d -print lndir(1X)
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