My HP-UX 11.0 system is supporting an Oracle database. I have found a number of references on the Net to the "Max I/O size" in relation to setting Oracle parameters.
How can I tell what my max i/o size is? I originally made the assumption that it was referring to my stripe size but now I think... (1 Reply)
My code below is supposed to find which company had the most business and then print the appropriate fields from another file which are the companies ID number and name. I can loop through awk and display all the total amount of business for each company but I need help in only printing out the... (1 Reply)
Hi,
I have a challenging task,in which i have to find the duplicate files by its name and size,then i need to take anyone of the file.Then i need to open the file and find for more than one pattern and count of that pattern.
Note:These are the samples of two files,but i can have more... (2 Replies)
Hi,
I have this input file called ttbitnres (which is catenated and sorted):-
8 0.4444 213
10 0.5555 342
11 0.5555 321
12 0.5555 231
13 0.4444 400
My code is at :-
#!/bin/bash
echo -e Version "\t" Number of Pass "\t" Number of Fail "\t" Rank Position "\t"Min "\t" Max... (1 Reply)
Hi,
I have files named as
energy.dat.1
energy.dat.2
energy.dat.3
...
energy.dat.2342
I would like to find the file with maximum number in the filename (ex. energy.dat.2342) and open it.
Would you please share your expertize in writing the script?
Thanks in advance. (8 Replies)
Hi,
I have the below text:
16:00 0.50
16:00 0.30
16:00 0.00
16:00 0.00
16:00 0.30
16:01 0.00
16:01 0.30
I want to find the max of the 2nd column grouping by the values in the 1st column using awk. So
16:00 0.50
16:01 0.30
I have tried (3 Replies)
Discussion started by: satishrao
3 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)