Sponsored Content
Top Forums UNIX for Dummies Questions & Answers remove duplicate lines based on two columns and judging from a third one Post 302555270 by sk1418 on Wednesday 14th of September 2011 09:54:32 AM
Old 09-14-2011
Code:
2GOX03.output:Apol-Pol     10.64        -.79        (B)ALA3TRP 
1R6Q20.output:Char-Pol     13.40 -.78        (B)ASP14SER 
3SGB19.output:Char-Pol     13.40        -.58        (A)GLU177ATYR 
2GOX13.output:Char-Pol     10.40        -.55        (B)ARG65GLN 
2GOX14.output:Apol-Pol    10.40        -.55        (B)ALA3TRP

why 5th line should be deleted if you want to keep the lower number in that column?
are -.55 and -.78 negative numbers ?

Last edited by sk1418; 09-14-2011 at 10:59 AM..
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Remove lines, Sorted with Time based columns using AWK & SORT

Hi having a file as follows MediaErr.log 84 Server1 Policy1 Schedule1 master1 05/08/2008 02:12:16 84 Server1 Policy1 Schedule1 master1 05/08/2008 02:22:47 84 Server1 Policy1 Schedule1 master1 05/08/2008 03:41:26 84 Server1 Policy1 ... (1 Reply)
Discussion started by: karthikn7974
1 Replies

2. UNIX for Dummies Questions & Answers

Duplicate columns and lines

Hi all, I have a tab-delimited file and want to remove identical lines, i.e. all of line 1,2,4 because the columns are the same as the columns in other lines. Any input is appreciated. abc gi4597 9997 cgcgtgcg $%^&*()()* abc gi4597 9997 cgcgtgcg $%^&*()()* ttt ... (1 Reply)
Discussion started by: dr_sabz
1 Replies

3. Shell Programming and Scripting

Remove duplicate columns in input file

hello, I have an input file which looks like this: 2 C:G 17 -0.14 8.75 33.35 3 G:C 16 -2.28 0.98 28.22 4 C:G 15 0.39 11.06 29.31 5 G:C 14 2.64 5.17 36.07 6 G:C 13 -0.65 2.05 21.94 7 C:G 11 138.96 21.64 14.40 9 C:G 27 -2.40 6.95 27.98 10 C:G 26 2.89 15.60 34.33 11 G:C... (7 Replies)
Discussion started by: linux_usr
7 Replies

4. Shell Programming and Scripting

Remove duplicate lines based on field and sort

I have a csv file that I would like to remove duplicate lines based on field 1 and sort. I don't care about any of the other fields but I still wanna keep there data intact. I was thinking I could do something like this but I have no idea how to print the full line with this. Please show any method... (8 Replies)
Discussion started by: cokedude
8 Replies

5. Shell Programming and Scripting

Remove duplicate based on Group

Hi, How can I remove duplicates from a file based on group on other column? for example: Test1|Test2|Test3|Test4|Test5 Test1|Test6|Test7|Test8|Test5 Test1|Test9|Test10|Test11|Test12 Test1|Test13|Test14|Test15|Test16 Test17|Test18|Test19|Test20|Test21 Test17|Test22|Test23|Test24|Test5 ... (2 Replies)
Discussion started by: yale_work
2 Replies

6. Shell Programming and Scripting

Remove Duplicate by considering multiple columns

hi friends, my input chr1 exon 35204 35266 gene_id "GOLGB1"; transcript_id "GOLGB1"; chr1 exon 42357 42473 gene_id "GOLGB1"; transcript_id "GOLGB1"; chr1 exon 45261 45404 gene_id "GOLGB1"; transcript_id "GOLGB1"; chr1 exon 50701 50778 gene_id "GOLGB1"; transcript_id "GOLGB1";... (2 Replies)
Discussion started by: jacobs.smith
2 Replies

7. Shell Programming and Scripting

Remove duplicate value based on two field $4 and $5

Hi All, i have input file like below... CA009156;20091003;M;AWBKCA72;123;;CANADIAN WESTERN BANK;EDMONTON;;2300, 10303, JASPER AVENUE;;T5J 3X6;; CA009156;20091003;M;AWBKCA72;321;;CANADIAN WESTERN BANK;EDMONTON;;2300, 10303, JASPER AVENUE;;T5J 3X6;; CA009156;20091003;M;AWBKCA72;231;;CANADIAN... (2 Replies)
Discussion started by: mohan sharma
2 Replies

8. Shell Programming and Scripting

How To Remove Duplicate Based on the Value?

Hi , Some time i got duplicated value in my files , bundle_identifier= B Sometext=ABC bundle_identifier= A bundle_unit=500 Sometext123=ABCD bundle_unit=400 i need to check if there is a duplicated values or not if yes , i need to check if the value is A or B when Bundle_Identified ,... (2 Replies)
Discussion started by: OTNA
2 Replies

9. Shell Programming and Scripting

Remove columns with duplicate entries

I have a 13gb file. It has the following columns: The 3rd column is basically correlation values. I want to delete those rows which are repeated between the columns: A B 0.04 B C 0.56 B B 1 A A 1 C D 1 C C 1 Desired Output: (preferably in a .csv format A,B,0.04 B,C,0.56 C,D,1... (3 Replies)
Discussion started by: Sanchari
3 Replies

10. Shell Programming and Scripting

Remove duplicate lines from file based on fields

Dear community, I have to remove duplicate lines from a file contains a very big ammount of rows (milions?) based on 1st and 3rd columns The data are like this: Region 23/11/2014 09:11:36 41752 Medio 23/11/2014 03:11:38 4132 Info 23/11/2014 05:11:09 4323... (2 Replies)
Discussion started by: Lord Spectre
2 Replies
Char(3) 						User Contributed Perl Documentation						   Char(3)

NAME
PDL::Char -- PDL subclass which allows reading and writing of fixed-length character strings as byte PDLs SYNOPSIS
use PDL; use PDL::Char; my $pchar = PDL::Char->new( [['abc', 'def', 'ghi'],['jkl', 'mno', 'pqr']] ); $pchar->setstr(1,0,'foo'); print $pchar; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'foo' 'ghi'] # ['jkl' 'mno' 'pqr'] # ] print $pchar->atstr(2,0); # Prints: # ghi DESCRIPTION
This subclass of PDL allows one to manipulate PDLs of 'byte' type as if they were made of fixed length strings, not just numbers. This type of behavior is useful when you want to work with charactar grids. The indexing is done on a string level and not a character level for the 'setstr' and 'atstr' commands. This module is in particular useful for writing NetCDF files that include character data using the PDL::NetCDF module. FUNCTIONS
new Function to create a byte PDL from a string, list of strings, list of list of strings, etc. # create a new PDL::Char from a perl array of strings $strpdl = PDL::Char->new( ['abc', 'def', 'ghij'] ); # Convert a PDL of type 'byte' to a PDL::Char $strpdl1 = PDL::Char->new (sequence (byte, 4, 5)+99); $pdlchar3d = PDL::Char->new([['abc','def','ghi'],['jkl', 'mno', 'pqr']]); string Function to print a character PDL (created by 'char') in a pretty format. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['jkl' 'mno' 'pqr'] # ] # 'string' is overloaded to the "" operator, so: # print $char; # should have the same effect. setstr Function to set one string value in a character PDL. The input position is the position of the string, not a character in the string. The first dimension is assumed to be the length of the string. The input string will be null-padded if the string is shorter than the first dimension of the PDL. It will be truncated if it is longer. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); $char->setstr(0,1, 'foobar'); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['foo' 'mno' 'pqr'] # ] $char->setstr(2,1, 'f'); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['foo' 'mno' 'f'] -> note that this 'f' is stored "f" # ] atstr Function to fetch one string value from a PDL::Char type PDL, given a position within the PDL. The input position of the string, not a character in the string. The length of the input string is the implied first dimension. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); print $char->atstr(0,1); # Prints: # jkl perl v5.8.0 2001-05-27 Char(3)
All times are GMT -4. The time now is 01:11 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy