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Shell Programming and Scripting
Passing a variable to #BSUB -n in a LSF file
Post 302547406 by lrayo on Monday 15th of August 2011 02:01:30 PM
08-15-2011
Passing a variable to #BSUB -n in a LSF file
Hi There!
I'm writing this LSF script to make it easier to send jobs to a cluster when varying certain parameters. At one point I'd like to do something like:
set NPROC = 10
and later on call BSUB using something like:
#BSUB -n $NPROC
unfortunately for me, this throws an error:
Bad argument for option -n. Job not submitted.
Anyone with an idea on how to pass BSUB a variable? With this example it sounds sort of roundabout, but sometimes you want to do some arithmetic with $NPROC before passing it to #BSUB and then being able to do it this way may be something very useful.
Thanks!
---------- Post updated at 06:01 PM ---------- Previous update was at 05:57 PM ----------
Sorry, I read the post back and I wanted to make sure the problem is clear, this works straight away:
#BSUB -n 10
This doesn't work
set NPROC = 10
#BSUB -n $NPROC
Thanks
I'm writing this LSF script to make it easier to send jobs to a cluster when varying certain parameters. At one point I'd like to do something like:
set NPROC = 10
and later on call BSUB using something like:
#BSUB -n $NPROC
unfortunately for me, this throws an error:
Bad argument for option -n. Job not submitted.
Anyone with an idea on how to pass BSUB a variable? With this example it sounds sort of roundabout, but sometimes you want to do some arithmetic with $NPROC before passing it to #BSUB and then being able to do it this way may be something very useful.
Thanks!
---------- Post updated at 06:01 PM ---------- Previous update was at 05:57 PM ----------
Sorry, I read the post back and I wanted to make sure the problem is clear, this works straight away:
#BSUB -n 10
This doesn't work
set NPROC = 10
#BSUB -n $NPROC
Thanks
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uudemon
uudemon(4) Kernel Interfaces Manual uudemon(4) NAME
uudemon.admin, uudemon.cleanu, uudemon.hour, uudemon.poll - Administrative shell scripts for polling remote systems, cleaning up spool directories, reporting status to the system administrator, and routine invocations of the uuxqt and uusched daemons SYNOPSIS
These shell scripts reside in the following directory: /usr/lib/uucp DESCRIPTION
All the scripts can be run from the command line or can be run automatically by the cron daemon. To automatically run the scripts, remove the comment character (#) from the beginning of the relevant line in the /var/spool/cron/crontabs/uucp file. This script reports status to the system administrator. It issues the uustat command to find out the status of uucp jobs. It mails the results to the uucp login ID. The script may be modified to send mail to any login ID such as the uucp administrative login ID (uucpa) or root. This script cleans up the /var/spool/uucp and /var/spool/uucppublic directories by running the uucleanup command. The uucleanup com- mand is run with the following parameters: -C7, -D7, X2, -o2, -W1. This script runs the uusched and uuxqt daemons in the background. This script polls the systems listed in the /usr/lib/uucp/Poll file. The uudemon.poll script should be scheduled before the uudemon.hour script. This allows uudemon.poll to create any command files before cron runs the uudemon.hour script. FILES
Contains the uudemon.admin, uudemon.cleanu, uudemon.hour and uudemon.poll files. Contains the uucp file. RELATED INFORMATION
Commands: cron(8), uucleanup(8), uusched(8), uuxqt(1) Files: /usr/lib/uucp delim off uudemon(4)