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Full Discussion: zombie
Operating Systems Linux Red Hat zombie Post 302541440 by agama on Sunday 24th of July 2011 03:33:37 PM
Old 07-24-2011
Zombie processes, sometimes called defunct processes, are processes that have completed, but their parent process has not yet received status of their termination. It's not unusual to see a few zombies for a few seconds if the parent process is busy and has not issued a wait() system call to collect the status of a child/children. However, if the zombies persist (their PIDs are always the same), this is an indication that the parent application is either poorly coded, or wedged (looping). Given that your CPU usage is low, I'm guessing the parent(s) aren't wedged.

Zombie processes cannot be killed, as you've likely found out. The good news is that the only system resources they are taking is the slot in the process table; all other real resources (memory, sockets, open files, etc.) were closed/released when the process ended. The zombies only become a problem when their numbers start to "clog" the process table which might have a finite size.

If you have the option to stop and restart the parent, then your zombie processes will be cleaned up with the parent. If the parent is some service that you must keep running in order to prevent down-time, then you're stuck.

If you want to see which process(es) own the zombies, capture the output of a ps -elf (or ps -ajx on FreeBSD) and look for the zombies. For each zombie the parent process id (PPID) should be listed (column 3 usually) and that can be used to find it's parent (look for the process with the PPID you found listed as the PID -- usually column 2).

This illustrates the output from the ps command showing the process a.out having a defunct/zombie child process:

Code:
0 S scooter  31578  4537  0  84   4 -   406 -      15:29 pts/3    00:00:00 a.out
1 Z scooter  31579 31578  0  84   4 -     0 exit   15:29 pts/3    00:00:00 [a.out] <defunct>

 

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bup-margin(1)						      General Commands Manual						     bup-margin(1)

NAME
bup-margin - figure out your deduplication safety margin SYNOPSIS
bup margin [options...] DESCRIPTION
bup margin iterates through all objects in your bup repository, calculating the largest number of prefix bits shared between any two entries. This number, n, identifies the longest subset of SHA-1 you could use and still encounter a collision between your object ids. For example, one system that was tested had a collection of 11 million objects (70 GB), and bup margin returned 45. That means a 46-bit hash would be sufficient to avoid all collisions among that set of objects; each object in that repository could be uniquely identified by its first 46 bits. The number of bits needed seems to increase by about 1 or 2 for every doubling of the number of objects. Since SHA-1 hashes have 160 bits, that leaves 115 bits of margin. Of course, because SHA-1 hashes are essentially random, it's theoretically possible to use many more bits with far fewer objects. If you're paranoid about the possibility of SHA-1 collisions, you can monitor your repository by running bup margin occasionally to see if you're getting dangerously close to 160 bits. OPTIONS
--predict Guess the offset into each index file where a particular object will appear, and report the maximum deviation of the correct answer from the guess. This is potentially useful for tuning an interpolation search algorithm. --ignore-midx don't use .midx files, use only .idx files. This is only really useful when used with --predict. EXAMPLE
$ bup margin Reading indexes: 100.00% (1612581/1612581), done. 40 40 matching prefix bits 1.94 bits per doubling 120 bits (61.86 doublings) remaining 4.19338e+18 times larger is possible Everyone on earth could have 625878182 data sets like yours, all in one repository, and we would expect 1 object collision. $ bup margin --predict PackIdxList: using 1 index. Reading indexes: 100.00% (1612581/1612581), done. 915 of 1612581 (0.057%) SEE ALSO
bup-midx(1), bup-save(1) BUP
Part of the bup(1) suite. AUTHORS
Avery Pennarun <apenwarr@gmail.com>. Bup unknown- bup-margin(1)
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