when we are spooling query o/p to certain txt file,in that file how we can get headers in the query.(through unix shell scripting).
for exmple
q1="slect * from XXXXXX;";
sqlplus XXX/XXXX@XXXXX
spool XXXX.txt
$q1
spool off
in the text file i want the headers of the query.....
... (0 Replies)
Hi,
I'm trying to strip all lines between two headers in a file:
### BEGIN ###
Text to remove, contains all kinds of characters
...
Antispyware-Downloadserver.com (Germany)=http://www.antispyware-downloadserver.c
om/updates/
Antispyware-Downloadserver.com #2... (3 Replies)
Hi ,
I have a typical situation. I have 4 files and with different headers (number of headers is varible ).
I need to make such a merged file which will have headers combined from all files (comman coluns should appear once only).
For example -
File 1
H1|H2|H3|H4
11|12|13|14
21|22|23|23... (1 Reply)
Hi!
Trying to find string and then put the above Headers of corresponding fist line.
After executing a Property command a get this output:
SP/CH-CH Span Name Type TG Idle InUse OffHk OnHk Ring
-------- ------------------------------ ------ ---- ----- ----- -----
02/01-24 CARRIERSS7... (6 Replies)
I have a simple program to create a poker deck, shuffle it and deal cards. Here it is:
#include <stdio.h>
#include <stdlib.h>
#include <time.h>
struct Card {
char *face,
*suit;
};
void fillDeck (Card *deck, char *face, char *suit);
void shuffle (Card *deck);
void... (4 Replies)
Hi,
I have a folder that contains many (multiple) files
1.fasta
2.fasta
3.fasta
4.fasta
5.fasta
.
.
100's of files
Each such file have data in the following format
for example:
vi 1.fasta
>AB_1 200bp
MLKKPIIIGVTGGSGGGKTSVSRAILDSFPNARIAMIQHDSYYKDQSHMSFEERVKTNYDHPLAFDTDFM... (4 Replies)
Hey Guys,
Absolute neewbie here. I am trying to see if it is possible to edit headers/meta-data of files in Mac OSX. I am basically trying to change an audio file header to read 16bit instead of 24bit.
We have an issue with some of our software and it regularly exports 16bit audio files with... (3 Replies)
I'm trying to pick up some Unix SysAdmin skills on my own outside of work through the use of the "Unix and Linux System Administrators Handbook." I've found the exercises to be very beneficial, until I came to this.... "What path did the email take? To Whom was it addressed, and to whom was it... (0 Replies)
Dear Guru's
I'm using Putty and want to edit a file. I know we generally use vi editor to do it. As I'm not good in using vi editor, I want to convert the vi into something like text pad. Is there any option in Putty to do the same ? Thanks for your response.
Srini (6 Replies)
Discussion started by: thummi9090
6 Replies
LEARN ABOUT DEBIAN
bio::seqio::tab
Bio::SeqIO::tab(3pm) User Contributed Perl Documentation Bio::SeqIO::tab(3pm)NAME
Bio::SeqIO::tab - nearly raw sequence file input/output stream. Reads/writes id" "sequence"
"
SYNOPSIS
Do not use this module directly. Use it via the Bio::SeqIO class.
DESCRIPTION
This object can transform Bio::Seq objects to and from tabbed flat file databases.
It is very useful when doing large scale stuff using the Unix command line utilities (grep, sort, awk, sed, split, you name it). Imagine
that you have a format converter 'seqconvert' along the following lines:
my $in = Bio::SeqIO->newFh(-fh => *STDIN , '-format' => $from);
my $out = Bio::SeqIO->newFh(-fh=> *STDOUT, '-format' => $to);
print $out $_ while <$in>;
then you can very easily filter sequence files for duplicates as:
$ seqconvert < foo.fa -from fasta -to tab | sort -u |
seqconvert -from tab -to fasta > foo-unique.fa
Or grep [-v] for certain sequences with:
$ seqconvert < foo.fa -from fasta -to tab | grep -v '^S[a-z]*control' |
seqconvert -from tab -to fasta > foo-without-controls.fa
Or chop up a huge file with sequences into smaller chunks with:
$ seqconvert < all.fa -from fasta -to tab | split -l 10 - chunk-
$ for i in chunk-*; do seqconvert -from tab -to fasta < $i > $i.fa; done
# (this creates files chunk-aa.fa, chunk-ab.fa, ..., each containing 10
# sequences)
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS
Philip Lijnzaad, p.lijnzaad@med.uu.nl
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq object
Args :
write_seq
Title : write_seq
Usage : $stream->write_seq($seq)
Function: writes the $seq object into the stream
Returns : 1 for success and 0 for error
Args : Bio::Seq object
perl v5.14.2 2012-03-02 Bio::SeqIO::tab(3pm)