when we are spooling query o/p to certain txt file,in that file how we can get headers in the query.(through unix shell scripting).
for exmple
q1="slect * from XXXXXX;";
sqlplus XXX/XXXX@XXXXX
spool XXXX.txt
$q1
spool off
in the text file i want the headers of the query.....
... (0 Replies)
Hi,
I'm trying to strip all lines between two headers in a file:
### BEGIN ###
Text to remove, contains all kinds of characters
...
Antispyware-Downloadserver.com (Germany)=http://www.antispyware-downloadserver.c
om/updates/
Antispyware-Downloadserver.com #2... (3 Replies)
Hi ,
I have a typical situation. I have 4 files and with different headers (number of headers is varible ).
I need to make such a merged file which will have headers combined from all files (comman coluns should appear once only).
For example -
File 1
H1|H2|H3|H4
11|12|13|14
21|22|23|23... (1 Reply)
Hi!
Trying to find string and then put the above Headers of corresponding fist line.
After executing a Property command a get this output:
SP/CH-CH Span Name Type TG Idle InUse OffHk OnHk Ring
-------- ------------------------------ ------ ---- ----- ----- -----
02/01-24 CARRIERSS7... (6 Replies)
I have a simple program to create a poker deck, shuffle it and deal cards. Here it is:
#include <stdio.h>
#include <stdlib.h>
#include <time.h>
struct Card {
char *face,
*suit;
};
void fillDeck (Card *deck, char *face, char *suit);
void shuffle (Card *deck);
void... (4 Replies)
Hi,
I have a folder that contains many (multiple) files
1.fasta
2.fasta
3.fasta
4.fasta
5.fasta
.
.
100's of files
Each such file have data in the following format
for example:
vi 1.fasta
>AB_1 200bp
MLKKPIIIGVTGGSGGGKTSVSRAILDSFPNARIAMIQHDSYYKDQSHMSFEERVKTNYDHPLAFDTDFM... (4 Replies)
Hey Guys,
Absolute neewbie here. I am trying to see if it is possible to edit headers/meta-data of files in Mac OSX. I am basically trying to change an audio file header to read 16bit instead of 24bit.
We have an issue with some of our software and it regularly exports 16bit audio files with... (3 Replies)
I'm trying to pick up some Unix SysAdmin skills on my own outside of work through the use of the "Unix and Linux System Administrators Handbook." I've found the exercises to be very beneficial, until I came to this.... "What path did the email take? To Whom was it addressed, and to whom was it... (0 Replies)
Dear Guru's
I'm using Putty and want to edit a file. I know we generally use vi editor to do it. As I'm not good in using vi editor, I want to convert the vi into something like text pad. Is there any option in Putty to do the same ? Thanks for your response.
Srini (6 Replies)
Discussion started by: thummi9090
6 Replies
LEARN ABOUT DEBIAN
pynast
VERSION:(1) User Commands VERSION:(1)NAME
PyNAST - alignment of short DNA sequences
SYNOPSIS
pynast [options] {-i input_fp -t template_fp}
DESCRIPTION
[] indicates optional input (order unimportant) {} indicates required input (order unimportant)
Example usage:
pynast -i my_input.fasta -t my_template.fasta
OPTIONS --version
show program's version number and exit
-h, --help
show this help message and exit
-t TEMPLATE_FP, --template_fp=TEMPLATE_FP
path to template alignment file [REQUIRED]
-i INPUT_FP, --input_fp=INPUT_FP
path to input fasta file [REQUIRED]
-v, --verbose
Print status and other information during execution [default: False]
-p MIN_PCT_ID, --min_pct_id=MIN_PCT_ID
minimum percent sequence identity to consider a sequence a match [default: 75.0]
-l MIN_LEN, --min_len=MIN_LEN
minimum sequence length to include in NAST alignment [default: 1000]
-m PAIRWISE_ALIGNMENT_METHOD, --pairwise_alignment_method=PAIRWISE_ALIGNMENT_METHOD
method for performing pairwise alignment [default: uclust]
-a FASTA_OUT_FP, --fasta_out_fp=FASTA_OUT_FP
path to store resulting alignment file [default: derived from input filepath]
-g LOG_FP, --log_fp=LOG_FP
path to store log file [default: derived from input filepath]
-f FAILURE_FP, --failure_fp=FAILURE_FP
path to store file of seqs which fail to align [default: derived from input filepath]
-e MAX_E_VALUE, --max_e_value=MAX_E_VALUE
Depreciated. Will be removed in PyNAST 1.2
-d BLAST_DB, --blast_db=BLAST_DB
Depreciated. Will be removed in PyNAST 1.2
SEE ALSO
http://pynast.sourceforge.net
Version: pynast 1.1 August 2011 VERSION:(1)