Sponsored Content
Top Forums Shell Programming and Scripting Recode A/T/G/C to 0/1 using a reference column Post 302540060 by peanuts48 on Tuesday 19th of July 2011 12:28:22 PM
Old 07-19-2011
Looks like it works!

Hey Thanks a lot!
 

8 More Discussions You Might Find Interesting

1. SuSE

need help with recode command for CR/LF

Not sure if this is a Linux issue or specific to SuSE Linux, but, in the infinite wisdom of the developers they decided to do away with the dos2unix and unix2dos commands which were very handy in handling the CR/LF issue between unix and dos/windows files. More to the point I've created a tr... (1 Reply)
Discussion started by: 2reperry
1 Replies

2. Shell Programming and Scripting

Changing one column of delimited file column to fixed width column

Hi, Iam new to unix. I have one input file . Input file : ID1~Name1~Place1 ID2~Name2~Place2 ID3~Name3~Place3 I need output such that only first column should change to fixed width column of 15 characters of length. Output File: ID1<<12 spaces>>Name1~Place1 ID2<<12... (5 Replies)
Discussion started by: manneni prakash
5 Replies

3. Shell Programming and Scripting

Writing an algorithm to recode data points

I have a file that has been partially recoded so that data points that were formerly letter combinations are now -1, 0, or 1. I need to finish recoding the GG and CC data points. The file looks like this: ID 1 2 3 4 5 6 7 8 83845676 0 0 0 0 CC -1 CC CC 838469. -1 -1 1 GG CC 0 CC 1 83847041... (10 Replies)
Discussion started by: doobedoo
10 Replies

4. Shell Programming and Scripting

Help with replace column one content based on reference file

Input file 1 testing 10 20 1 A testing 20 40 1 3 testing 23 232 2 1 testing 10 243 2 . . Reference file 1 final 3 used . . Output file (2 Replies)
Discussion started by: perl_beginner
2 Replies

5. Shell Programming and Scripting

Help with replace column one content based on reference file

Input file 1 testing 10 20 1 A testing 20 40 1 3 testing 23 232 2 1 testing 10 243 2 . . Reference file 1 final 3 used . . Output file (1 Reply)
Discussion started by: perl_beginner
1 Replies

6. Shell Programming and Scripting

Recode alphabet into numbers

I have a genotype.bim file where it contains information about SNPs and genotype. As a hypothetical example, let's say genotype.bim snp1 ... A G snp2 ... G T snp3 ... G T snp4 ... G A ... snpN ... C G where first column identifies each SNP and 5th and 6th column has genotype... (3 Replies)
Discussion started by: johnkim0806
3 Replies

7. Shell Programming and Scripting

Perl de-reference code reference variable

Guys, May i know how can we de reference the code reference variable.? my $a = sub{$a=shift;$b=shift;print "SUM:",($a+$b),"\n";}; print $a->(4,5); How can we print the whole function ? Please suggest me regarding this. Thanks for your time :) Cheers, Ranga :) (0 Replies)
Discussion started by: rangarasan
0 Replies

8. Shell Programming and Scripting

Grep values from column 2 in reference of column 1

Gents Is it possible to update the code to get the desired output files from the input list. I called variable to the first column. I need to consider the first column as key to grep the values in the second column according to the desired request. input list (attached ) output1 ... (12 Replies)
Discussion started by: jiam912
12 Replies
pbmreduce(1)						      General Commands Manual						      pbmreduce(1)

NAME
pbmreduce - read a portable bitmap and reduce it N times SYNOPSIS
pbmreduce [-floyd|-fs|-threshold ] [-value val] N [pbmfile] DESCRIPTION
Reads a portable bitmap as input. Reduces it by a factor of N, and produces a portable bitmap as output. pbmreduce duplicates a lot of the functionality of pgmtopbm; you could do something like pnmscale | pgmtopbm, but pbmreduce is a lot faster. pbmreduce can be used to "re-halftone" an image. Let's say you have a scanner that only produces black&white, not grayscale, and it does a terrible job of halftoning (most b&w scanners fit this description). One way to fix the halftoning is to scan at the highest possible res- olution, say 300 dpi, and then reduce by a factor of three or so using pbmreduce. You can even correct the brightness of an image, by using the -value flag. OPTIONS
By default, the halftoning after the reduction is done via boustrophedonic Floyd-Steinberg error diffusion; however, the -threshold flag can be used to specify simple thresholding. This gives better results when reducing line drawings. The -value flag alters the thresholding value for all quantizations. It should be a real number between 0 and 1. Above 0.5 means darker images; below 0.5 means lighter. All flags can be abbreviated to their shortest unique prefix. SEE ALSO
pnmenlarge(1), pnmscale(1), pgmtopbm(1), pbm(5) AUTHOR
Copyright (C) 1988 by Jef Poskanzer. 02 August 1989 pbmreduce(1)
All times are GMT -4. The time now is 01:54 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy