I am accessing a UNIX server via FTP. I want to retieve a file in a directory. What is the UNIX command that I need to view and retrieve files from a directory? (1 Reply)
Hi,
I have a challenging task,in which i have to find the duplicate files by its name and size,then i need to take anyone of the file.Then i need to open the file and find for more than one pattern and count of that pattern.
Note:These are the samples of two files,but i can have more... (2 Replies)
I have directories like V00R01,V00R02,V01R01,V01R02 in a directory
where V is version and R is a release. basically I need to set base directory and current directory. Under a version there can be any number of releases and there can be number of versions also.
V00R01...V00R50..so on
also,... (2 Replies)
Hello all,
Here's the deal...I have one directory with many subdirs and files.
What I want to find out is who is keeping old files and directories...say files and dirs that they didn't use since a number of n days, only one level under the initial dir. Output to a file.
A script for... (5 Replies)
Hi,
Can anyone redirect to an existing thread or provide some info on how to find the size of a directory and it's sub-directories using a single script ?
I tried finding a similar thread but in vain.
I'm a newbie and any help would be greatly appreciated.
Thanks in advance. (3 Replies)
Hello,
Motive: Search all directories which are older than 5 days.
Example: consider following directory structure:
abc/dir1 abc/dir1/dir abc/dir2 abc/dir3 abc/dir3/temp
Suppose dir1 and dir3 are 5 days older. Then I am looking for a command which lists abc/dir1 and abic/dir3 only so that... (4 Replies)
Hi ,
I am very new to unix as well as shell scripting. I have to write a script for the following requirement.
In a particular mount, have to list all the directories and sub directories along with size of the directory and sub directory in ascending order.
Please help me in this regard and many... (4 Replies)
Hi,
In the Unix Box, I have a situation, where there is folder name called "Projects" and in that i have 20 Folders S1,S2,S3...S20. In each of the Folders S1,S2,S3,...S20 , there is a same name folder named "MP". So Now, I want to get all the files in all the "MP" Folders and write all those... (6 Replies)
I have multiply directories scattered throughout my system that end in 2011.
Example:
one_2011
two_2011
three_2011
etc....
I'm trying to find all of these directories but coming up short.
I tried
find / -type d -name *2011 > example
Any suggestions? I already searched in the... (13 Replies)
Hi All,
I need your help in finding pattern of directories.
need to search for all pattern have "mypatern" from base directory folder.
example
-------
server1 - base directory
100 server1/ab_123456_1/mypattern
100 server1/ab_123456_2/mypattern
200 server1/ab_123457_1/mypattern... (13 Replies)
Discussion started by: lxdorney
13 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)