I am converting mainframes JCL to be used in shell on a one to one basis... when i use the sort command unix does ascii sort as a result which numbers are first followed by charecters in the Ascending sort ... but themainframes uses the EBCDIC as result gives the charecters followed by numbers in... (5 Replies)
My shell script below for import data to Oracle
it run okay. but the text display not correct follow order command executed.
=========================Shell Script code=================
#!/bin/sh
#directory = ${1-'pwd'}
#run import data with SQLLoader
runSQLLoader()
{
... (2 Replies)
I need to sort the particular column only in reverse order how i can give it..
if i give the -r option the whole file is getting sorted in reverse order.
1st 2nd col 3rd
C col 4th col 5th col
-------------------------------------------
C... (7 Replies)
Hi
I am using this
cat substitutionFeats.txt | gawk '{$0=gensub(/\t/,"blabla",1);print}' | gawk '{print length, $0}' | sort -n | sort -r
and the "sort -n" command doesn't work as expected: it leads to a wrong ordering:
64 Adjustable cuffs
64 Abrasion-
64 Abrasion pas
647 Sanitized 647... (4 Replies)
Hello all
I was wondering if someone has an idea how to sort by a specific order, let's say by a specific alphabet containing only 4 letters like (d,s,a,p) instead of (a,b,c....z) ??
Cheers! (6 Replies)
Hi,
while using following awk commend I’m getting confused,
The output is not like as the row present in input files, can anyone explain and tell me how to print in the order like in input.
value=$(awk 'FNR>1 && NR==FNR{a=$4;next} a{sum+=$4} END {for(i in sum){printf i"\t"sum/2"@@";}}'... (5 Replies)
I am trying to sort a log file in chronological order to identify which ones did not process and still have an old (probably yesterday's) date. This is a sample of the file:flatf 010140 flatf Thu May 10 22:22:11 CST 2018 flats finished
flatf 010142 flatf Thu May 10 22:31:25 CST 2018 flats... (4 Replies)
Hi,
I have a problem . I have few directories like inpTDT_1, inpTDT_2, inpTDT_3 and so on inside HOME directory . In one of my perl script (which is in my HOME), the above directories like inpTDT_1, inpTDT_2, inpTDT_3 are sorting out in an order So I wanted to sort all the inpTDT_1, inpTDT_2,... (1 Reply)
Discussion started by: venkatesh
1 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)