I have a master file that i need to split into multiple files based on matched patterns. sample of my data as follows:-
i want the result to be generated in 3 different files (based on my input) and the output should look like this:-
scaffR1 scaffR2 scaffR3
i had tried 2 methods as follows:-
1)
2)
But both did not really give me the result as i expected. The first one save each line to a new file. the second one group them but requires me to do it manually.
would appreciate kind help on this. Thanks..
Moderator's Comments:
Please use code tags when posting data and code samples!
Last edited by vgersh99; 03-14-2011 at 06:54 PM..
Reason: code tags, please!
I have a list of patterns (regexes) in a file and use with `grep -f <file_with_list_of_regexes.txt> input.txt` to search in my input for those patterns. grep is doing a fantastic job at it and finds me the matching input text but I also want to see in the output the regex (from... (1 Reply)
I am wanting to fetch the content of the table within a file
the table begins with data label like
N Batch Mn(I) RMSdev I/rms Rmerge Number Nrej Cm%poss AnoCmp MaxRes CMlplc SmRmerge SmMaxRes $$ $$
. #columns of data
.
.
.
.
.
$$
I tried the command
awk... (18 Replies)
Hi,
i need help to delete all the lines between 2 matched patterns and the first pattern must be deleted too. sample as follows:
inputfile.txt
>kump_1
...........................
...........................
>start_0124
dgfhghgfh
fgfdgfh
fdgfdh
>kump_2
............................. (7 Replies)
Hi,
I need help to find matched patterns in 30 files residing in a folder simultaneously. All these files only contain 1 column. For example,
File1
Gr_1
st-e34ss-11dd
bt-wwd-fewq
pt-wq02-ddpk
pw-xsw17-aqpp
Gr_2
srq-wy09-yyd9
sqq-fdfs-ffs9
Gr_3
etas-qqa-dfw
ddw-ppls-qqw... (10 Replies)
Hi,
I need help to match pattern started with "RW" in file 1 and with pattern in $1 in file 2 as follows:-
File 1
BH /TOTAL=466(423); /POSITIVE=300(257); /UNKNOWN=25(25);
BH /F_P=141(141); /F_N=136; /P=4;
CC /TAX=!?; /MAX-R=2;
CC /VER=2;
RW P9610, AR_BSU , T; PAE25, AE_E57... (10 Replies)
Hi,
I am trying to extract some patterns from a line. The input file is space delimited and i could not use column to get value after "IN" or "OUT" patterns as there could be multiple white spaces before the next digits that i need to print in the output file . I need to print 3 patterns in a... (3 Replies)
Hi
I have two lists of patterns named A and B consisting of around 200 entries in each and I want to extract all the sentences from a big text file which match atleast one pattern from both A and B.
For example, pattern list A consists of :
ama
ani
ahum
mari
...
...
and pattern... (1 Reply)
My input looks like this.
# Lot Of CODE Before
AppType_somethinglese=$(cat << EOF
AppType_test1='test-tool/blatest-tool-ear'
AppType_test2='test/blabla-ear'
# Lot Of CODE After
I want to print text betwen 1) _ and = and 2)/ and ' from each line
and exclude lines with "EOF".
Output... (2 Replies)
Hello all,
I have since given up trying to figure this out and used sed instead, but I am trying to understand awk and was wondering how someone might do this in awk.
I am trying to match on the first field of a specific file with the first field on multiple files, and append the second field... (2 Replies)