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Full Discussion: Finding a pattern with grep
Top Forums UNIX for Dummies Questions & Answers Finding a pattern with grep Post 302503687 by moyzZ on Friday 11th of March 2011 10:16:18 AM
Old 03-11-2011
Thanks, I'm looking for a DNA binding motif, so that some letters of the DNA code repeat in a certain order..
 

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BZGREP(1)						      General Commands Manual							 BZGREP(1)

NAME
bzgrep, bzfgrep, bzegrep - search possibly bzip2 compressed files for a regular expression SYNOPSIS
bzgrep [ grep_options ] [ -e ] pattern filename... bzegrep [ egrep_options ] [ -e ] pattern filename... bzfgrep [ fgrep_options ] [ -e ] pattern filename... DESCRIPTION
Bzgrep is used to invoke the grep on bzip2-compressed files. All options specified are passed directly to grep. If no file is specified, then the standard input is decompressed if necessary and fed to grep. Otherwise the given files are uncompressed if necessary and fed to grep. If bzgrep is invoked as bzegrep or bzfgrep then egrep or fgrep is used instead of grep. If the GREP environment variable is set, bzgrep uses it as the grep program to be invoked. For example: for sh: GREP=fgrep bzgrep string files for csh: (setenv GREP fgrep; bzgrep string files) AUTHOR
Charles Levert (charles@comm.polymtl.ca). Adapted to bzip2 by Philippe Troin <phil@fifi.org> for Debian GNU/Linux. SEE ALSO
grep(1), egrep(1), fgrep(1), bzdiff(1), bzmore(1), bzless(1), bzip2(1) BZGREP(1)
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